AT5G05970.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 25047 Blast hits to 16019 proteins in 612 species: Archae - 24; Bacteria - 4682; Metazoa - 9072; Fungi - 5014; Plants - 2729; Viruses - 0; Other Eukaryotes - 3526 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:1795464..1799313 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 84632.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 781 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMSNLVEPSW RLLAASGGDT VKLFDVSADS GDPCVLSYTP SPGCAVNSVK WNHTNLVVAS TGEDKKISLW RKNGQSLGTV PVTGKDGGDS AEECLSAISF 101: SKKGSRYICS GGTGQIVKIW DLQRKLCIKK LKGHTSTITG VMYNCKDEHL ASVSVGGDLI VHNLASGARA TELKDPNGQV LRLLDYSRSS RHLLVTAGDD 201: GTVHLWDTTG RSPKMSWLKQ HSAPTAGVCF SPSNEKIIAS VGMDKKLYTY DSGSRRSSSC IAYEAPFSSL AFGDNGYILV AGTSNGRVVF YDIRGKPQPV 301: TVLHAFSNSE DVTSLSWQTS KPVIVNEKNY TSEMALLGST VEDSVVIPDP LPSTTPSASQ SAMAPGSRGV SASTVNASSV EQTPNRNHLW PSGPLGRLHA 401: LRANDSYNDD MGVFSPIIDV SSVEKWADSE GYNNKDHLVV DNKPSSLLFP SSSKGYSFGD NGSKEHPIFD WKPSSTSKQD DPRAAFSSFG SITPTASSKS 501: EDSALTPPEA WGGDKFSEKF NQLANEKFSD KFSHLHAPSR LAVSSTGAST SGSMFSSSRD FPLSHGQTNF ANASLEFPRI RDFSSTFETS STQTDNNLPS 601: SPLFTKGITA PGNIDSLRLS PNFTRRFSTY AERISTTSSF SDGASLSLGG SPKIKKTGSE TREEVLNHLL ARPETVVATE AGAMPLMNGG LKQSQTDQQQ 701: VMGSSNFTLQ LFQRTLEGTL DSFQNSIHDD VRNLHIEILR QFHMHEMEMS KVLSSILENQ AEQMKELKLL RKENQELRQR L |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)