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AT5G05970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis
Computational
Description (TAIR10)
NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 25047 Blast hits to 16019 proteins in 612 species: Archae - 24; Bacteria - 4682; Metazoa - 9072; Fungi - 5014; Plants - 2729; Viruses - 0; Other Eukaryotes - 3526 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZQNYeggNOG:KOG4378EMBL:AB017060EMBL:AY093770
EMBL:CP002688EnsemblPlants:AT5G05970EnsemblPlants:AT5G05970.1EnsemblPlants:AT5G05970.2
entrez:830483ExpressionAtlas:B3H5K9Gene3D:2.130.10.10GeneID:830483
GO:GO:0000777GO:GO:0000919GO:GO:0005635GO:GO:0005828
GO:GO:0009524GO:GO:0009553GO:GO:0009555GO:GO:0032467
GO:GO:0060236GO:GO:2000694hmmpanther:PTHR22847HOGENOM:HOG000243035
InParanoid:B3H5K9InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775iPTMnet:B3H5K9KEGG:ath:AT5G05970KO:K16547
ncoils:CoilOMA:NLKDDMDPaxDb:B3H5K9Pfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:B3H5K9PRIDE:B3H5K9
PRO:PR:B3H5K9PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:B3H5K9Proteomes:UP000006548RefSeq:NP_001119176.1RefSeq:NP_196216.2
scanprosite:PS00678SMART:SM00320SMR:B3H5K9STRING:3702.AT5G05970.2
SUPFAM:SSF50978TAIR:AT5G05970tair10-symbols:NEDD1UniGene:At.32924
UniGene:At.66718UniProt:B6EUA6
Coordinates (TAIR10) chr5:+:1795464..1799313
Molecular Weight (calculated) 84632.90 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.44
Length 781 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSNLVEPSW RLLAASGGDT VKLFDVSADS GDPCVLSYTP SPGCAVNSVK WNHTNLVVAS TGEDKKISLW RKNGQSLGTV PVTGKDGGDS AEECLSAISF
101: SKKGSRYICS GGTGQIVKIW DLQRKLCIKK LKGHTSTITG VMYNCKDEHL ASVSVGGDLI VHNLASGARA TELKDPNGQV LRLLDYSRSS RHLLVTAGDD
201: GTVHLWDTTG RSPKMSWLKQ HSAPTAGVCF SPSNEKIIAS VGMDKKLYTY DSGSRRSSSC IAYEAPFSSL AFGDNGYILV AGTSNGRVVF YDIRGKPQPV
301: TVLHAFSNSE DVTSLSWQTS KPVIVNEKNY TSEMALLGST VEDSVVIPDP LPSTTPSASQ SAMAPGSRGV SASTVNASSV EQTPNRNHLW PSGPLGRLHA
401: LRANDSYNDD MGVFSPIIDV SSVEKWADSE GYNNKDHLVV DNKPSSLLFP SSSKGYSFGD NGSKEHPIFD WKPSSTSKQD DPRAAFSSFG SITPTASSKS
501: EDSALTPPEA WGGDKFSEKF NQLANEKFSD KFSHLHAPSR LAVSSTGAST SGSMFSSSRD FPLSHGQTNF ANASLEFPRI RDFSSTFETS STQTDNNLPS
601: SPLFTKGITA PGNIDSLRLS PNFTRRFSTY AERISTTSSF SDGASLSLGG SPKIKKTGSE TREEVLNHLL ARPETVVATE AGAMPLMNGG LKQSQTDQQQ
701: VMGSSNFTLQ LFQRTLEGTL DSFQNSIHDD VRNLHIEILR QFHMHEMEMS KVLSSILENQ AEQMKELKLL RKENQELRQR L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)