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AT1G16690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23851315 (2013): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Enhancer of polycomb-like transcription factor protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Enhancer of polycomb-like transcription factor protein; CONTAINS InterPro DOMAIN/s: Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT1G79020.1); Has 400 Blast hits to 400 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 95; Plants - 75; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSSXeggNOG:KOG2261EMBL:AB493461EMBL:AC011808
EMBL:CP002684EnsemblPlants:AT1G16690EnsemblPlants:AT1G16690.1entrez:838238
GeneID:838238GO:GO:0003700GO:GO:0006351GO:GO:0006355
GO:GO:0006357GO:GO:0032777Gramene:AT1G16690.1hmmpanther:PTHR14898
hmmpanther:PTHR14898:SF5HOGENOM:HOG000006404InterPro:IPR019542InterPro:IPR024943
KEGG:ath:AT1G16690KO:K11322ncoils:CoilOMA:HINCGNT
PANTHER:PTHR14898Pfam:PF10513PhylomeDB:Q9FX82PIR:B86302
Proteomes:UP000006548RefSeq:NP_173113.2STRING:3702.AT1G16690.1TAIR:AT1G16690
UniGene:At.41874UniProt:Q9FX82
Coordinates (TAIR10) chr1:+:5706458..5709371
Molecular Weight (calculated) 50677.60 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.64
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLSFRPRP LDIHKKLPIL KSFKDFEDED NPSSITRNSQ LLRISAVEVV DNEVQPPVPS KKLISEIPTP QYLVVDTYER DYSRTFNQPA SYLRARGARA
101: ELGEFVEYDL DNDDDDWLYE YNKETMILSP EMLEIVIFKL EVLDHKARER AGVITPTLGL PVPVLLQPDA AGEALKYLSI KYGVFHAIYS YWKNKREIWQ
201: KPILRRLQPP PPVNDTNPYN VFRPREKAHR LHARRMQQRE NNAQSFEKLR QVRRNLDQAK TILEALIKRE EKKRDFMASE VSLQRIQLKY KNETELLEDS
301: LALAGFPLST AYRFGSSEDE FMDSDDPTTT QTCTRPSFTP HRRFTDSNLA RAQAGSIKQE ARRLGWLHKL NPNEPVMLFT KALVPDKLAA AGIIPPSDAR
401: SGRARFQGRM GRGGRIVFDR WNPLNQAHIN CGNTLYIAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)