suba logo
AT1G08000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 10
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 10 (GATA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1492 Blast hits to 1460 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 625; Plants - 786; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AC026875EMBL:AY063953
EMBL:AY096723EMBL:CP002684EnsemblPlants:AT1G08000EnsemblPlants:AT1G08000.1
EnsemblPlants:AT1G08000.2entrez:837315Gene3D:3.30.50.10GeneID:837315
Genevisible:Q8VZP4GO:GO:0000977GO:GO:0001085GO:GO:0001228
GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0005667
GO:GO:0006366GO:GO:0008270GO:GO:0030154GO:GO:0045944
Gramene:AT1G08000.1Gramene:AT1G08000.2hmmpanther:PTHR10071hmmpanther:PTHR10071:SF184
HOGENOM:HOG000238267InParanoid:Q8VZP4InterPro:IPR000679InterPro:IPR013088
KEGG:ath:AT1G08000OMA:THCETITPaxDb:Q8VZP4Pfam:PF00320
Pfam:Q8VZP4Pfscan:PS50114PhylomeDB:Q8VZP4PRIDE:Q8VZP4
PRO:PR:Q8VZP4PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q8VZP4
Proteomes:UP000006548RefSeq:NP_172278.1RefSeq:NP_973790.1scanprosite:PS00344
SMART:SM00401SMR:Q8VZP4STRING:3702.AT1G08000.1SUPFAM:SSF57716
TAIR:AT1G08000tair10-symbols:GATA10UniGene:At.27130UniProt:Q8VZP4
Coordinates (TAIR10) chr1:-:2483460..2484564
Molecular Weight (calculated) 34291.70 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.63
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MNWLPEAEAE EHLKGILSGD FFDGLTNHLD CPLEDIDSTN GEGDWVARFQ DLEPPPLDMF PALPSDLTSC PKGAARVRIP NNMIPALKQS CSSEALSGIN
101: STPHQSSAPP DIKVSYLFQS LTPVSVLENS YGSLSTQNSG SQRLAFPVKG MRSKRRRPTT VRLSYLFPFE PRKSTPGESV TEGYYSSEQH AKKKRKIHLI
201: THTESSTLES SKSDGIVRIC THCETITTPQ WRQGPSGPKT LCNACGVRFK SGRLVPEYRP ASSPTFIPSV HSNSHRKIIE MRKKDDEFDT SMIRSDIQKV
301: KQGRKKMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)