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AT4G10240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : B-box zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: light-regulated zinc finger protein 1 (TAIR:AT1G78600.1); Has 1675 Blast hits to 1305 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 1598; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
EMBL:AF096373EMBL:AL049488EMBL:AL161516EMBL:AY122916
EMBL:CP002687EnsemblPlants:AT4G10240EnsemblPlants:AT4G10240.1entrez:826615
GeneID:826615Genevisible:O82617GO:GO:0000989GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270
GO:GO:0009640Gramene:AT4G10240.1hmmpanther:PTHR31832hmmpanther:PTHR31832:SF8
HOGENOM:HOG000239240InParanoid:O82617InterPro:IPR000315KEGG:ath:AT4G10240
OMA:CDEAIHTPaxDb:O82617Pfam:O82617Pfam:PF00643
Pfscan:PS50119PhylomeDB:O82617PIR:T01973PRO:PR:O82617
PROSITE:PS50119ProteinModelPortal:O82617Proteomes:UP000006548RefSeq:NP_192762.1
SMART:SM00336SMR:O82617STRING:3702.AT4G10240.1TAIR:AT4G10240
UniGene:At.33641UniProt:O82617
Coordinates (TAIR10) chr4:-:6368967..6369526
Molecular Weight (calculated) 17859.80 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.37
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)