AT5G15760.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ribosomal protein PSRP-3/Ycf65 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ribosomal protein PSRP-3/Ycf65; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, plastid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: Ribosomal protein PSRP-3/Ycf65 (TAIR:AT1G68590.1); Has 388 Blast hits to 388 proteins in 107 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:5143100..5143905 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20468.80 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.25 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
Length | 183 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAVQANQSAS FGFRTASPSQ KLSSKPIAHI SLSTKLKPSS RPSLSCSTWN QGQIPARHSC INPGIFAYPP SNLTFSHELP ESESPPLGKK KMRVLVKPLE 101: KPKVVLKFVW MQKDIGVALD HMIPGFGTIP LSPYYFWPRK DAWEELKTLL ESKPWISELH RVFLLNQATD IINLWQSSGG DLS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)