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AT5G15760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein PSRP-3/Ycf65
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein PSRP-3/Ycf65; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, plastid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: Ribosomal protein PSRP-3/Ycf65 (TAIR:AT1G68590.1); Has 388 Blast hits to 388 proteins in 107 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWDeggNOG:ENOG4111VGAEMBL:AK117858EMBL:AL391144
EMBL:BT003711EMBL:CP002688EnsemblPlants:AT5G15760EnsemblPlants:AT5G15760.1
entrez:831432GeneID:831432Genevisible:Q9LFV0GO:GO:0003735
GO:GO:0005840GO:GO:0006412GO:GO:0009507Gramene:AT5G15760.1
hmmpanther:PTHR35108hmmpanther:PTHR35108:SF1HOGENOM:HOG000240847InParanoid:Q9LFV0
InterPro:IPR006924KEGG:ath:AT5G15760KO:K19032OMA:WISELHR
PaxDb:Q9LFV0Pfam:PF04839Pfam:Q9LFV0PhylomeDB:Q9LFV0
PIR:T51405PRIDE:Q9LFV0PRO:PR:Q9LFV0ProDom:PD015453
ProteinModelPortal:Q9LFV0Proteomes:UP000006548RefSeq:NP_197080.1SMR:Q9LFV0
STRING:3702.AT5G15760.1TAIR:AT5G15760UniGene:At.66680UniProt:Q9LFV0
Coordinates (TAIR10) chr5:+:5143100..5143905
Molecular Weight (calculated) 20468.80 Da
IEP (calculated) 10.25
GRAVY (calculated) -0.27
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVQANQSAS FGFRTASPSQ KLSSKPIAHI SLSTKLKPSS RPSLSCSTWN QGQIPARHSC INPGIFAYPP SNLTFSHELP ESESPPLGKK KMRVLVKPLE
101: KPKVVLKFVW MQKDIGVALD HMIPGFGTIP LSPYYFWPRK DAWEELKTLL ESKPWISELH RVFLLNQATD IINLWQSSGG DLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)