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AT3G08947.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08943.1); Has 1718 Blast hits to 1652 proteins in 220 species: Archae - 0; Bacteria - 1; Metazoa - 645; Fungi - 556; Plants - 267; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5215eggNOG:KOG1241EMBL:CP002686EnsemblPlants:AT3G08947
EnsemblPlants:AT3G08947.1entrez:3768765Gene3D:1.25.10.10GeneID:3768765
GO:GO:0005829GO:GO:0006886GO:GO:0006913GO:GO:0008565
Gramene:AT3G08947.1hmmpanther:PTHR10527hmmpanther:PTHR10527:SF19InParanoid:F4IYK4
InterPro:IPR001494InterPro:IPR011989InterPro:IPR016024InterPro:IPR027140
KEGG:ath:AT3G08947KO:K14293OMA:MERNYIVPANTHER:PTHR10527:SF19
PaxDb:F4IYK4Pfam:PF03810Pfam:PF13513Pfscan:PS50166
PRIDE:F4IYK4PROSITE:PS50166ProteinModelPortal:F4IYK4Proteomes:UP000006548
RefSeq:NP_001154598.1SMART:SM00913SMR:F4IYK4STRING:3702.AT3G08947.1
SUPFAM:SSF48371TAIR:AT3G08947UniGene:At.21964UniProt:F4IYK4
Coordinates (TAIR10) chr3:+:2724007..2726722
Molecular Weight (calculated) 96610.40 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.06
Length 873 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMEITQFLL AAQSADARVR TEAEGNLRQF QEQNLPLFLV SLSFELANND KPAESRRLAG ILLKNSLDAK DSATKDHLVK QWFAIDVALK SQIKDRLLRT
101: LGSSALEARH TSAQVIAKVA SIEIPQKQWP ELVGSLLNNM TQQGSPAHLK QSTLETLGYV CEEISHHDLV QDEVNSVLTA VVQGMNQSEN TAEVRLAATK
201: ALCNALDFSQ TNFENEMERN YIMKMVCETA CSKEAEIRQA AFECLVSIAS TYYEVLEHYI QTLFELTSNA VKGDEESVSL QAIEFWSSIC DEEIDRQEYD
301: SPASGDSSPP HSSFIEKALP HLVQMLLETL LKQEEDQDHD DDVWNISMAG GTCLGLVART VGDHVVPLVM PFVEKNISSP DWRCREAATY AFGSILEGPT
401: IDKLAPMVAA GLEFLLNATK DQNNHVRDTT AWTLSRIFEF LHSPDSGFSV ISPENLPRIV SVLLESIKDV PNVAEKVCGA IYNLAQGYED SGASSSLLSP
501: YLTEIITHLL AAAERTDGAE SKLRGAAYET LNEVVRCSNL SEASSIIAHL LPAIMKKLAE TMDLPIISTD DREKQAEVQA SLCGVLQVII QKLSGREDTK
601: PIIMQSADDI MRLFLRVFGC HSSSVHEEAM LAIGALAYAT GAEFVKYMPE LFKYLQMGLQ NFEEYQVCSI TVGVLGDICR ALDEKILPFC DQIMGLLIQN
701: LQSGALHRSV KPPIFSCFGD IALAIGAHFE RYVAPAVQIM QGAAQVCAQM DTLDEELMDY ANQLRRSIFE AYSGILQGFK DTKAELMMPY AQHLLQFVEL
801: VSKDPLRDES VTKAAVAAMG DLADVVGENT KQLFQNFTFF GEFLNECLES EDEDLKVTAR WTQGMIARLM HPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)