AT4G30870.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Restriction endonuclease, type II-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
MMS AND UV SENSITIVE 81 (MUS81); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT5G39770.1); Has 631 Blast hits to 481 proteins in 192 species: Archae - 11; Bacteria - 4; Metazoa - 158; Fungi - 249; Plants - 48; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:15028586..15032461 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 74060.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDDERRVLCP ENRGLAAYVL QKKQEYAEKP KGLSENLERT FVKGYRSVCD AKDPINTLKD LSQIKGFGKW MVKLMKGYFD TAVESSEQED LPDNRAGKKA 101: NGKKRYIPQR NSVGYALLIT LHRRTTNGKE FMRKQELIDA ADANGLSHAP VGPEKGKGKA GLGHSKREWY SGWSCMTTLI QKGLVVKSSN PAKYMLTVEG 201: REVANECILR SGLPDSVDIL SVDEMDPTPQ AKKTPNQNPT CSFTMREELP YVDPRCRAQS AIPSDILEKF TPFGYSKEQV VAAFREVSDG SGDKDPSTLW 301: LSVMCHLRQA EVYNSCPDSR NSKKDSSGPF KSQIRQVDLE GSRAKKFRSC NDGSTLNPCS SGSSHAVKAC SSSLASDGTK GITNIPRLPP LQFGETFEEA 401: YDVILILDDR EKFATKGSRS RNIVENICSE FNIKIEVRRL PVGDCIWIAR HKYLETEYVL DFIAERKNVD DMRSSIRDNR YRDQKLRLQR SGFKKLIYIL 501: EGDPNHSDAA ESIKTACFTT EILEGFDVLR THGLGETLRK YGYLTKSIYQ YYKLRVNDND QSKGAASCPS FDSFVKRCQD LDKMTISDVF AIQLMQVPQV 601: TEEIAIAVLD MYPTLLSLAS AYSHLEADVS AQEEMLRNRS NNVICASASK NIFKLVWGE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)