AT3G14172.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:4698860..4704773 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140969.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||
| Length | 1270 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRPAIPLDYA VFQLSPKRSR CELFVSTTGN TEKLASGLVK PFVAHLKVAE EQVSREVQSI RLEVESNKNA GTWFTKGTLE RFVRFVSTPE VLELVSALDV 0101: EMSQLEAARK IYGEGTSDQR SSAKDSTDTT PAADVTKKEL LKAIDLRLAA VRQDLATACN RASAAGFNPI TVSELSQFAD RFGANRLNEA CTKFITLCQR 0201: RPELMSSWRV NQEEEAIRSS WESDMSIDDP SEDPSRDLAT NRNQQHREYQ TGMEEQSATG TSYCQHESKL KPQSSHDEND EEEEKSTVQN EPLVSQPRQL 0301: TRRLSVQERI SMFENKQKEN SGEKTAVAKS TELKRLSSDL SSSAGMEKVV VRRWSGASDM SIDLGNDRKD DTGDSPLCTP SSSSVSKDGS GASSKQFVGY 0401: NKKEQNGLSH AANPHRNEEE CTSNNGGDWG MDEVESQNSS STFLPKDKEV DLNVPFRTNN QVRHQGNSPD RYLEKNSKYK FHEKNPRASS DYTGNANIND 0501: DANNQMSDFI SNRQNQIQFR DPQSHSLSTL QQLGGTEPII TSVQSNGVTA ESPRKELMPS DRQSPLLEDR QRKTPFSGGS EQMKRPHSRR PEMGSAAVNT 0601: KPSAAINSVS DISESDTLIQ VSPTEQVQRA RPSKGSQELN DELKVKANEL EKLFAEHMLR VPGDQSSSVR RGKPGKPSEQ AVTSQLRRPV AQDLSSVQIS 0701: DQKTLAMPTL TSNDEDKFKT PPTMKMVVTK DYGDTTRQNF PEISFSDNSR GKFYEQYMQK RDAKLKEDWS CRRTEKEAKL KVMQDILDRS NAEMKTKFSQ 0801: STGRRDSSAR RAEKLVYFNS KLSAKKDQHP ISSFQSEEDE DGSRSTQNKK LQQNKNNLLI ARTTATSASR SAAKVSTLSA VRRRGQSEKH FAQSVPNFSE 0901: IKKEGMKPAS GVGKNGVRTQ VRSSIRPKAV NEEEKLRRPK IFRKGAAEAA ELATDFSQLK SEDGVSVPLY LEQEQSGRNF NSHGTGISSD NAQLKASEES 1001: EASDDMEKEG MGEALDDTEV EAFTDAENEM PRLSQESEEW GSTGVANGES FSQLDAGSNT ELPAAMASRH QTMGSILDSP GESTSPWNSR VKHRYPNEAS 1101: ELDASVDSPV GSPAFWNFSS LNHTESDTTQ MRKKWGAAQK RAAGGNPSQN QCQQDVTKGL KRLLNFGRKN RAAESLADWI SATTSEGDDD TDDGRDLANR 1201: SSEDLRKSRM GFLQSHPSGD SFNESELFTE HVQTTGTPLS FKLKEDQTTG ASVKAPRSFF SLSNFRSKGK |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)