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AT4G32730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like protein
Curator
Summary (TAIR10)
Encodes a putative c-myb-like transcription factor with three MYB repeats.
Computational
Description (TAIR10)
ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1 (ATMYB3R1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 12611 Blast hits to 8395 proteins in 560 species: Archae - 0; Bacteria - 0; Metazoa - 1244; Fungi - 1015; Plants - 7252; Viruses - 4; Other Eukaryotes - 3096 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF151646EMBL:AF176005
EMBL:AF188677EMBL:AF189212EMBL:AF189784EMBL:AL022537
EMBL:AL161582EMBL:CP002687EnsemblPlants:AT4G32730EnsemblPlants:AT4G32730.1
entrez:829409ExpressionAtlas:Q9S7G7Gene3D:1.10.10.60GeneID:829409
Genevisible:Q9S7G7GO:GO:0003677GO:GO:0005634hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF599HOGENOM:HOG000244033InParanoid:Q9S7G7InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930iPTMnet:Q9S7G7KEGG:ath:AT4G32730
PaxDb:Q9S7G7Pfam:PF00249Pfam:Q9S7G7Pfscan:PS51294
PhylomeDB:Q9S7G7PIR:E85384PIR:T04452PRIDE:Q9S7G7
PRO:PR:Q9S7G7PROSITE:PS51294ProteinModelPortal:Q9S7G7Proteomes:UP000006548
RefSeq:NP_194999.1SMART:SM00717SMR:Q9S7G7STRING:3702.AT4G32730.2
SUPFAM:SSF46689TAIR:AT4G32730tair10-symbols:ATMYB3R-1tair10-symbols:ATMYB3R1
tair10-symbols:MYB3R-1tair10-symbols:MYB3R1tair10-symbols:PC-MYB1UniGene:At.2235
UniProt:Q9S7G7
Coordinates (TAIR10) chr4:+:15791039..15794252
Molecular Weight (calculated) 86510.60 Da
IEP (calculated) 5.39
GRAVY (calculated) -0.81
Length 776 amino acids
Sequence (TAIR10)
(BLAST)
001: MKREMKAPTT PLESLQGDLK GKQGRTSGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIID
101: LVEKYGPKKW STISQHLPGR IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW NSSVKKKLDS YYASGLLDQC
201: QSSPLIALQN KSIASSSSWM HSNGDEGSSR PGVDAEESEC SQASTVFSQS TNDLQDEVQR GNEEYYMPEF HSGTEQQISN AASHAEPYYP SFKDVKIVVP
301: EISCETECSK KFQNLNCSHE LRTTTATEDQ LPGVSNDAKQ DRGLELLTHN MDNGGKNQAL QQDFQSSVRL SDQPFLSNSD TDPEAQTLIT DEECCRVLFP
401: DNMKDSSTSS GEQGRNMVDP QNGKGSLCSQ AAETHAHETG KVPALPWHPS SSEGLAGHNC VPLLDSDLKD SLLPRNDSNA PIQGCRLFGA TELECKTDTN
501: DGFIDTYGHV TSHGNDDNGG FPEQQGLSYI PKDSLKLVPL NSFSSPSRVN KIYFPIDDKP AEKDKGALCY EPPRFPSADI PFFSCDLVPS NSDLRQEYSP
601: FGIRQLMISS MNCTTPLRLW DSPCHDRSPD VMLNDTAKSF SGAPSILKKR HRDLLSPVLD RRKDKKLKRA ATSSLANDFS RLDVMLDEGD DCMTSRPSES
701: PEDKNICASP SIARDNRNCA SARLYQEMIP IDEEPKETLE SGGVTSMQNE NGCNDGGASA KNVSPSLSLH IIWYQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)