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AT5G08110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1205eggNOG:KOG4150EMBL:CP002688EnsemblPlants:AT5G08110
EnsemblPlants:AT5G08110.1entrez:830705Gene3D:3.40.50.300GeneID:830705
GO:GO:0003676GO:GO:0004386GO:GO:0005524Gramene:AT5G08110.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF252InParanoid:F4K9K8InterPro:IPR000626
InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR018973
InterPro:IPR027417InterPro:IPR029071iPTMnet:F4K9K8KEGG:ath:AT5G08110
OMA:INTHLTFPaxDb:F4K9K8Pfam:PF00270Pfam:PF00271
Pfam:PF09369Pfscan:PS50053Pfscan:PS51192Pfscan:PS51194
PRIDE:F4K9K8PROSITE:PS50053PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:F4K9K8Proteomes:UP000006548RefSeq:NP_196428.2SMART:SM00487
SMART:SM00490SMR:F4K9K8STRING:3702.AT5G08110.1SUPFAM:SSF52540
SUPFAM:SSF54236TAIR:AT5G08110UniGene:At.32623UniProt:F4K9K8
Coordinates (TAIR10) chr5:-:2594854..2600114
Molecular Weight (calculated) 126467.00 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.31
Length 1141 amino acids
Sequence (TAIR10)
(BLAST)
0001: MENERRSGGG DSVPISVRSI NGESTTVQVS SDGTIRDLKK ALKSCFPPAS SSSNFHLYIK GEKLKLDTRV AAITINDGDI LGLFPFKKKE LRQTPKPDLS
0101: KPSSLSSRTS TMKDENAKRA EDHCVGEKRK RDEEACPYGF FNDDLESECK DAFKGQNTEK LAEVLKSRNC LTSPGSTKCL MSWDSSSSLC SCPDWESLSR
0201: LAMSGVRVRI QDVKNLSVIC PKVITDDYEA VNYENAIVIA DYLEMDEKSG RKKIPLAKLF SAMKKREASF KSDFWESIRS LLNKNTGESG IAISLEGLLK
0301: FASEGRADGG NEARQAGKGT CPTSGSRKFQ TLCHATNSLL PSEMVEHLRN GIGSKGQVVH VEVIKARKSA YVEMSDKLSE TTKSALKRIG LNTLYSHQAE
0401: AISAALAGKN VAVATMTSSG KSLCYNVPVF EELCKDTNSC ALYLFPTKAL AQDQLRALSD LIKGFEASIN MGVYDGDTPY KDRTRLRSNA RLLITNPDML
0501: HISILRRHKE QFSRILSNLR YIVIDEAHIY KGPFGCHMAL ILRRLRRLCS HVYGVNPSFI FCTATSANPR EHCMELANLS ELELVTIDGS PSSEKLFVLW
0601: NPSAPPTSKS EKSSKVVSSS EAAADKPSGA AVDTLSGPAS EVSHLFAEMV QHGLRCIAFC PSRKLCELVL CLTREILAET APHLVEAITS YRGGYIAEDR
0701: RKIESDLFGG KLCGIAATNA LELGIDVGHI DVTLHLGFPG SIASLWQQAG RSGRRQKPSL AVYVAFLGPL DQYYMSFPDK LFGSPIECCH IDSQNKHVLM
0801: QHLACAALEH PLSLQYDQQH FGSGLSDPLA ELRNKGFLSF DPSRDSSSRI WNYIGREKNP ARIVSIRAIE TVRYRVMEKK SKDVLDEIEE SKAFFHVYEG
0901: AIYMNQGRNY LVTSLDIKEK VALCELVNVD YYTRTRDYTD IKVTGGDTAY PVKAPKKPTP QTHACRVTTK WFGFLRIRRR NNEVIDDVEL SLPSYTYQSQ
1001: AVWIQVPMSV KLAVETANLP FRAGLHAACH ALVNVVPTRV TCNYSDIAPE CPNPQEQRYF PARILVYDRH PGGTGISAKI CPLFFELLKD ARDLLRSCEK
1101: CPPETGCPKC AQTFGCRGYN ELLHKKAAIM IMQGVLDAKE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)