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AT5G45050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.633
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus.
Computational
Description (TAIR10)
TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1 (TTR1); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to virus, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G45260.1); Has 19463 Blast hits to 15000 proteins in 640 species: Archae - 10; Bacteria - 753; Metazoa - 207; Fungi - 5; Plants - 18197; Viruses - 4; Other Eukaryotes - 287 (source: NCBI BLink).
Protein Annotations
BioGrid:19785eggNOG:ENOG410JQXQeggNOG:ENOG410ZRADEMBL:AB010693
EMBL:AB019224EMBL:CP002688EnsemblPlants:AT5G45050EnsemblPlants:AT5G45050.1
entrez:834536ExpressionAtlas:Q9FL92Gene3D:2.20.25.80Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:834536Genevisible:Q9FL92GO:GO:0003700
GO:GO:0005524GO:GO:0005634GO:GO:0005774GO:GO:0006351
GO:GO:0006952GO:GO:0007165GO:GO:0043531GO:GO:0043565
hmmpanther:PTHR32096hmmpanther:PTHR32096:SF18HOGENOM:HOG000115011InParanoid:Q9FL92
IntAct:Q9FL92InterPro:IPR000157InterPro:IPR002182InterPro:IPR003657
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
OMA:GISCVCKPaxDb:Q9FL92Pfam:PF00931Pfam:PF03106
Pfam:PF07725Pfam:Q9FL92Pfscan:PS50811PhylomeDB:Q9FL92
PRIDE:Q9FL92PRO:PR:Q9FL92PROSITE:PS50811ProteinModelPortal:Q9FL92
Proteomes:UP000006548RefSeq:NP_851133.1SMART:SM00774SMR:Q9FL92
STRING:3702.AT5G45050.1SUPFAM:0050605SUPFAM:SSF118290SUPFAM:SSF46785
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G45050
tair10-symbols:ATWRKY16tair10-symbols:TTR1tair10-symbols:WRKY16UniGene:At.21909
UniProt:Q9FL92
Coordinates (TAIR10) chr5:-:18177016..18181805
Molecular Weight (calculated) 155710.00 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.32
Length 1372 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTESEQIVYI SCIEEVRYSF VSHLSKALQR KGVNDVFIDS DDSLSNESQS MVERARVSVM ILPGNRTVSL DKLVKVLDCQ KNKDQVVVPV LYGVRSSETE
0101: WLSALDSKGF SSVHHSRKEC SDSQLVKETV RDVYEKLFYM ERIGIYSKLL EIEKMINKQP LDIRCVGIWG MPGIGKTTLA KAVFDQMSGE FDAHCFIEDY
0201: TKAIQEKGVY CLLEEQFLKE NAGASGTVTK LSLLRDRLNN KRVLVVLDDV RSPLVVESFL GGFDWFGPKS LIIITSKDKS VFRLCRVNQI YEVQGLNEKE
0301: ALQLFSLCAS IDDMAEQNLH EVSMKVIKYA NGHPLALNLY GRELMGKKRP PEMEIAFLKL KECPPAIFVD AIKSSYDTLN DREKNIFLDI ACFFQGENVD
0401: YVMQLLEGCG FFPHVGIDVL VEKSLVTISE NRVRMHNLIQ DVGRQIINRE TRQTKRRSRL WEPCSIKYLL EDKEQNENEE QKTTFERAQV PEEIEGMFLD
0501: TSNLSFDIKH VAFDNMLNLR LFKIYSSNPE VHHVNNFLKG SLSSLPNVLR LLHWENYPLQ FLPQNFDPIH LVEINMPYSQ LKKLWGGTKD LEMLKTIRLC
0601: HSQQLVDIDD LLKAQNLEVV DLQGCTRLQS FPATGQLLHL RVVNLSGCTE IKSFPEIPPN IETLNLQGTG IIELPLSIVK PNYRELLNLL AEIPGLSGVS
0701: NLEQSDLKPL TSLMKISTSY QNPGKLSCLE LNDCSRLRSL PNMVNLELLK ALDLSGCSEL ETIQGFPRNL KELYLVGTAV RQVPQLPQSL EFFNAHGCVS
0801: LKSIRLDFKK LPVHYTFSNC FDLSPQVVND FLVQAMANVI AKHIPRERHV TGFSQKTVQR SSRDSQQELN KTLAFSFCAP SHANQNSKLD LQPGSSSMTR
0901: LDPSWRNTLV GFAMLVQVAF SEGYCDDTDF GISCVCKWKN KEGHSHRREI NLHCWALGKA VERDHTFVFF DVNMRPDTDE GNDPDIWADL VVFEFFPVNK
1001: QRKPLNDSCT VTRCGVRLIT AVNCNTSIEN ISPVLSLDPM EVSGNEDEEV LRVRYAGLQE IYKALFLYIA GLFNDEDVGL VAPLIANIID MDVSYGLKVL
1101: AYRSLIRVSS NGEIVMHYLL RQMGKEILHT ESKKTDKLVD NIQSSMIATK EIEITRSKSR RKNNKEKRVV CVVDRGSRSS DLWVWRKYGQ KPIKSSPYPR
1201: SYYRCASSKG CFARKQVERS RTDPNVSVIT YISEHNHPFP TLRNTLAGST RSSSSKCSDV TTSASSTVSQ DKEGPDKSHL PSSPASPPYA AMVVKEEDME
1301: QWDNMEFDVD VEEDTFIPEL FPEDTFADMD KLEENSQTMF LSRRSSGGNM EAQGKNSSDD REVNLPSKIL NR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)