AT3G20540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : polymerase gamma 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
polymerase gamma 1 (POLGAMMA1); FUNCTIONS IN: 3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 2 (TAIR:AT1G50840.1); Has 12537 Blast hits to 10327 proteins in 2621 species: Archae - 0; Bacteria - 7030; Metazoa - 148; Fungi - 0; Plants - 126; Viruses - 345; Other Eukaryotes - 4888 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7168261..7173357 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115569.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1034 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVSLRHLSP SSFWVSRRPR VSSSILSFLV PRRRILCTRK VAIIKGNAGY STATDCGGSH GFHHSGHQRS SSVEFSGEWK LNLGSKTARM VPPTVKQAGA 0101: VSAWREEVNN KLRGRNREYA NNQDDAFGNG SYILKGFVPK IDDVHSYGNG QNFDYNLKPG TDITTLGREL NGFMQTNSIR GSVVALPSKD IEVGETTDVT 0201: LKPLNSDTTL DNASYKKTAT ISKVEKCTNL SQVRANLKKI YNRVRVVDNV SSAKETVALL MNQYRNLVHA CDTEVSRIDV KTETPVDHGE MICFSIYCGS 0301: EADFGDGKSC IWVDVLGENG RDILAEFKPF FEDSSIKKVW HNYSFDNHII RNYGIKLSGF HGDTMHMARL WDSSRRISGG YSLEALTSDP KVLGGTETKE 0401: EAELFGKISM KKIFGKGKLK KDGSEGKLVI IPPVKELQME DREAWISYSA LDSISTLKLY ESMKKQLQAK KWFLDGKLIS KKNMFDFYQE YWQPFGELLA 0501: KMESEGMLVD RDYLAQIEIV AKAEQEIAVS RFRNWASKHC PDAKHMNVGS DTQLRQLFFG GISNSCNDED LPYEKLFKVP NVDKVIEEGK KRATKFRNIK 0601: LHRISDRPLP TEKFTASGWP SVSGDTLKAL AGKVSAEYDY MEGVLDTCLE ENIGDDDCIS LPDEVVETQH VNTSVESDTS AYGTAFDAFG GGESGKEACH 0701: AIAALCEVCS IDSLISNFIL PLQGSNVSGK DGRVHCSLNI NTETGRLSAR RPNLQNQPAL EKDRYKIRQA FIASPGNSLI VADYGQLELR ILAHLASCES 0801: MKEAFIAGGD FHSRTAMNMY PHIREAVENG EVLLEWHPQP GQEKPPVPLL KDAFASERRK AKMLNFSIAY GKTAIGLSRD WKVSREEAQD TVNLWYNDRQ 0901: EVRKWQELRK KEAIQKGYVL TLLGRARKFP EYRSRAQKNH IERAAINTPV QGSAADVAMC AMLEISNNQR LKELGWKLLL QVHDEVILEG PSESAENAKD 1001: IVVNCMSEPF NGKNILSVDL SVDAKCAQNW YAGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)