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AT2G06005.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.644
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRIGIDA interacting protein 1
Curator
Summary (TAIR10)
Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.
Computational
Description (TAIR10)
FRIGIDA interacting protein 1 (FIP1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20580.2); Has 339 Blast hits to 333 proteins in 113 species: Archae - 0; Bacteria - 43; Metazoa - 135; Fungi - 18; Plants - 56; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II0TeggNOG:ENOG4111FGGEMBL:AC005970EMBL:AY086482
EMBL:CP002685EnsemblPlants:AT2G06005EnsemblPlants:AT2G06005.1entrez:815154
ExpressionAtlas:Q8S8K9GeneID:815154GO:GO:0016021Gramene:AT2G06005.1
hmmpanther:PTHR31592HOGENOM:HOG000029088IntAct:Q8S8K9InterPro:IPR029399
KEGG:ath:AT2G06005ncoils:CoilOMA:MNQLQSEPfam:PF14802
PhylomeDB:Q8S8K9Proteomes:UP000006548RefSeq:NP_565332.1STRING:3702.AT2G06005.1
TAIR:AT2G06005tair10-symbols:FIP1TMHMM:TMhelixUniGene:At.41122
UniProt:Q8S8K9
Coordinates (TAIR10) chr2:+:2332583..2336022
Molecular Weight (calculated) 40588.00 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.19
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)