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AT1G20480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 83252 Blast hits to 75672 proteins in 3756 species: Archae - 1173; Bacteria - 54045; Metazoa - 3530; Fungi - 4633; Plants - 2807; Viruses - 1; Other Eukaryotes - 17063 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20480-MONOMERBioGrid:23875EC:6.2.1.-eggNOG:COG0318
eggNOG:KOG1176EMBL:AC027665EMBL:AY250833EMBL:CP002684
EnsemblPlants:AT1G20480EnsemblPlants:AT1G20480.1entrez:838636GeneID:838636
Genevisible:Q84P25GO:GO:0005524GO:GO:0005777GO:GO:0016874
Gramene:AT1G20480.1hmmpanther:PTHR24096hmmpanther:PTHR24096:SF186HOGENOM:HOG000230009
InParanoid:Q84P25IntAct:Q84P25InterPro:IPR000873InterPro:IPR020845
InterPro:IPR025110iPTMnet:Q84P25KEGG:ath:AT1G20480OMA:DMKAGQY
PaxDb:Q84P25Pfam:PF00501Pfam:PF13193Pfam:Q84P25
PhylomeDB:Q84P25PIR:D86338PRIDE:Q84P25PRO:PR:Q84P25
PROSITE:PS00455ProteinModelPortal:Q84P25Proteomes:UP000006548Reactome:R-ATH-75105
RefSeq:NP_173472.1scanprosite:PS00455SMR:Q84P25STRING:3702.AT1G20480.1
SUPFAM:SSF56801TAIR:AT1G20480TMHMM:TMhelixUniGene:At.41707
UniGene:At.69772UniProt:Q84P25
Coordinates (TAIR10) chr1:-:7094978..7097073
Molecular Weight (calculated) 61441.70 Da
IEP (calculated) 9.15
GRAVY (calculated) 0.05
Length 565 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)