AT5G50390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20520789..20522980 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79769.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 701 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIPLSRYQS IRLDEIRDSS SNPKVLTFPR KFSLRGRRWK NPFGRLSCSS VVQGLKPKPK LKPEPIRIEV KESKDQILDD TQISKSGVTI CSQIEKLVLC 101: NRFREAFELF EILEIRCSFK VGVSTYDALV EACIRLKSIR CVKRVYGFMM SNGFEPEQYM MNRILLMHVK CGMIIDARRL FDEIPERNLY SYYSIISGFV 201: NFGNYVEAFE LFKMMWEELS DCETHTFAVM LRASAGLGSI YVGKQLHVCA LKLGVVDNTF VSCGLIDMYS KCGDIEDARC AFECMPEKTT VAWNNVIAGY 301: ALHGYSEEAL CLLYDMRDSG VSIDQFTLSI MIRISTKLAK LELTKQAHAS LIRNGFESEI VANTALVDFY SKWGRVDTAR YVFDKLPRKN IISWNALMGG 401: YANHGRGTDA VKLFEKMIAA NVAPNHVTFL AVLSACAYSG LSEQGWEIFL SMSEVHGIKP RAMHYACMIE LLGRDGLLDE AIAFIRRAPL KTTVNMWAAL 501: LNACRMQENL ELGRVVAEKL YGMGPEKLGN YVVMYNMYNS MGKTAEAAGV LETLESKGLS MMPACTWVEV GDQTHSFLSG DRFDSYNETV KRQIYQKVDE 601: LMEEISEYGY SEEEQHLLPD VDEKEEERVG RYHSEKLAIA YGLVNTPEWN PLQITQNHRI CKNCHKVVEF ISLVTGREMV VRDASRFHHF KEGKCSCGGY 701: W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)