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AT1G55750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:27249eggNOG:ENOG410XRI6eggNOG:KOG2074EMBL:AC002328
EMBL:AK226523EMBL:CP002684EnsemblPlants:AT1G55750EnsemblPlants:AT1G55750.1
entrez:842024Gene3D:2.30.29.30GeneID:842024Genevisible:Q3ECP0
GO:GO:0000439GO:GO:0006289GO:GO:0006351GO:GO:0006355
Gramene:AT1G55750.1hmmpanther:PTHR12856HOGENOM:HOG000006252InParanoid:Q3ECP0
IntAct:Q3ECP0InterPro:IPR005607InterPro:IPR011993InterPro:IPR013876
InterPro:IPR027079KEGG:ath:AT1G55750KO:K03141OMA:LHHWTSI
PANTHER:PTHR12856PaxDb:Q3ECP0Pfam:PF03909Pfam:PF08567
Pfam:Q3ECP0Pfscan:PS50858PhylomeDB:Q3ECP0PRIDE:Q3ECP0
PRO:PR:Q3ECP0PROSITE:PS50858ProteinModelPortal:Q3ECP0Proteomes:UP000006548
Reactome:R-ATH-113418Reactome:R-ATH-5696395Reactome:R-ATH-5696400Reactome:R-ATH-674695
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
Reactome:R-ATH-77075RefSeq:NP_175971.3SMART:SM00751SMR:Q3ECP0
STRING:3702.AT1G55750.1SUPFAM:SSF140383SUPFAM:SSF50729TAIR:AT1G55750
UniGene:At.42907UniProt:Q3ECP0
Coordinates (TAIR10) chr1:-:20840449..20845135
Molecular Weight (calculated) 67517.70 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.64
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGQIEKLV KYKSTVKDPG TPGFLRIREG MLLFVPNDPK SDSKLKVLTQ NIKSQKYTKE GSNKPPWLNL TNKQAKSHIF EFENYPDMHA CRDFITKALA
101: KCELEPNKSV VSTSSEQLSI KELELRFKLL RENSELQRLH KQFVESKVLT EDEFWATRKK LLGKDSIRKS KQQLGLKSMM VSGIKPSTDG RTNRVTFNLT
201: PEIIFQIFAE KPAVRQAFIN YVPSKMTEKD FWTKYFRAEY LYSTKNTAVA AAEAAEDEEL AVFLKPDEIL ARETRHKIRR VDPTLDMEAD QGDDYTHLMD
301: HGIQRDGTMD VVEPQNDQFK RSLLQDLNRH AAVVLEGRSI DVESEDTRIV AEALTRVKQV SKADGETTKD ANQERLERMS RVAGMEDLQA PQNFPLAPLS
401: IKDPRDYFES QQGNVLNVPR GAKGLKRNVH EAYGLLKESI LEIRATGLSD PLIKPEVSFE VFSSLTRTIA TAKNINGKNP RESFLDRLPK STKDEVLHHW
501: TSIQELLKHF WSSYPITTTY LHTKVGKLKD AMSNTYSKLE AMKESVQSDL RHQVSLLVRP MQQALDAAFH HYEVDLQRRT AKSGERPNGY V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)