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AT1G79020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Enhancer of polycomb-like transcription factor protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Enhancer of polycomb-like transcription factor protein; CONTAINS InterPro DOMAIN/s: Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT1G16690.1); Has 409 Blast hits to 407 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSSXeggNOG:KOG2261EMBL:AK117445EMBL:BT004983
EMBL:CP002684EnsemblPlants:AT1G79020EnsemblPlants:AT1G79020.1entrez:844243
GeneID:844243GO:GO:0003700GO:GO:0006351GO:GO:0006355
GO:GO:0006357GO:GO:0032777Gramene:AT1G79020.1hmmpanther:PTHR14898
hmmpanther:PTHR14898:SF5HOGENOM:HOG000006404IntAct:Q8GYQ9InterPro:IPR019542
InterPro:IPR024943KEGG:ath:AT1G79020KO:K11322ncoils:Coil
OMA:FEDDETPPANTHER:PTHR14898Pfam:PF10513PhylomeDB:Q8GYQ9
Proteomes:UP000006548RefSeq:NP_178023.2STRING:3702.AT1G79020.1TAIR:AT1G79020
UniGene:At.34194UniProt:Q8GYQ9
Coordinates (TAIR10) chr1:-:29727282..29730059
Molecular Weight (calculated) 52401.20 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.78
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLSFRPRP LDIHKKLPIL KSFKDFEDDE TPTSTTRNSQ LLRIASVEVD NEVAPVPSKK PASEIPTPQF VIVDTYERDY SPTFGQPASY LRARGARSEL
101: GEFVEYDLDN EDEDWLYEFD KDKKELPPEK LEIIIFKLEV LDHKTRERAG VITPTLGSPV PVLLQFDAAS DVLQVLSINY GTFQAIFNYW KEKRKRWQKP
201: ILRRLQPPPP VNDTNPYNVF RPREKVHRLH TRRMQRRENN VQSFEKLRQV RRNLGQAQSI LEALIKREEK KRDVMDSEVS LQRIQLQYRH ETELLEDSLA
301: MPGFQPTTTS YKFGSSDDEL MDSDDHTSTR VRTRPAVIPS SRFTNLNLNA SHPGGIKQEV RRRQSQHGWL HRLDPNEPVM LFTKPLVPDK LAAAGIVPPT
401: PDSSPGQPPS RFQGRIGRGG RIIFDRWNPL MQSHINCGNS YYIAPNHRST NFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)