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AT1G18340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basal transcription factor complex subunit-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5242eggNOG:KOG2487EMBL:AC013354EMBL:AY085062
EMBL:BT025174EMBL:CP002684EnsemblPlants:AT1G18340EnsemblPlants:AT1G18340.1
entrez:838415GeneID:838415GO:GO:0000439GO:GO:0006289
GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT1G18340.1
hmmpanther:PTHR12831hmmpanther:PTHR12831:SF0HOGENOM:HOG000175900IntAct:Q8LF41
InterPro:IPR004600KEGG:ath:AT1G18340KO:K03143OMA:MQKAQNK
PANTHER:PTHR12831PaxDb:Q8LF41Pfam:PF03850PhylomeDB:Q8LF41
PIR:G86317ProteinModelPortal:Q8LF41Proteomes:UP000006548Reactome:R-ATH-113418
Reactome:R-ATH-5696395Reactome:R-ATH-5696400Reactome:R-ATH-674695Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-73776
Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075
RefSeq:NP_564050.1STRING:3702.AT1G18340.1TAIR:AT1G18340UniGene:At.41799
UniProt:Q8LF41
Coordinates (TAIR10) chr1:-:6311612..6313734
Molecular Weight (calculated) 33069.60 Da
IEP (calculated) 6.82
GRAVY (calculated) 0.04
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MPAIASKQYS DDVSLLVLLL DTNPLFWSTT SITFSQFLSH VLAFLNAVLG LNQLNQVVVI ATGYSSCDYI YDSSLTSNHG NFESNGTGMP AIFGSLLKKL
101: EEFVTKDEEL SKEEVSEDRI PSCLLSGSLS MALCYIQRVF RSGHLHPQPR ILCLQGSPDG PEQYVAVMNS IFSAQRLMVP IDSCYIGVQN SAFLQQASYI
201: TGGVHHTPKQ LDGLFQYLTT IFATDLHSRG FVQLPKPIGV DFRASCFCHK KTIDMGYICS VCLSIFCEHH KKCSTCGSVF GQSKLDDASS ASDKKRKAPS
301: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)