suba logo
AT5G45600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : YEATS family protein
Curator
Summary (TAIR10)
The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.
Computational
Description (TAIR10)
GLIOMAS 41 (GAS41); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: TBP-associated factor 14 (TAIR:AT2G18000.2); Has 807 Blast hits to 807 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 350; Fungi - 284; Plants - 64; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
BioGrid:19848eggNOG:COG5033eggNOG:KOG3149EMBL:AB022213
EMBL:AY072123EMBL:AY096486EMBL:AY463617EMBL:CP002688
EnsemblPlants:AT5G45600EnsemblPlants:AT5G45600.1EnsemblPlants:AT5G45600.2entrez:834599
ExpressionAtlas:Q9FH40GeneID:834599Genevisible:Q9FH40GO:GO:0005634
GO:GO:0005737GO:GO:0006281GO:GO:0006351GO:GO:0006355
GO:GO:0009908GO:GO:0009909GO:GO:0030154GO:GO:0035267
GO:GO:0043981GO:GO:0048510GO:GO:0090239GO:GO:2000028
hmmpanther:PTHR23195hmmpanther:PTHR23195:SF26HOGENOM:HOG000190181InParanoid:Q9FH40
IntAct:Q9FH40InterPro:IPR005033iPTMnet:Q9FH40KEGG:ath:AT5G45600
KO:K11341ncoils:CoilOMA:NVAFWLGPANTHER:PTHR23195
PaxDb:Q9FH40Pfam:PF03366Pfam:Q9FH40Pfscan:PS51037
PhylomeDB:Q9FH40PRIDE:Q9FH40PRO:PR:Q9FH40PROSITE:PS51037
ProteinModelPortal:Q9FH40Proteomes:UP000006548RefSeq:NP_001190475.1RefSeq:NP_199373.1
SMR:Q9FH40STRING:3702.AT5G45600.1TAIR:AT5G45600tair10-symbols:GAS41
tair10-symbols:TAF14BUniGene:At.30004UniProt:Q9FH40
Coordinates (TAIR10) chr5:+:18488059..18489666
Molecular Weight (calculated) 30233.90 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.58
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNSSSSKKQ AQDQPETSEP TLKSLKTKMT KSDEKQKKLK DIEISVPIVY GNVAFWLGKK ASEYQSHKWA VYVRGATNED ISVVVKKVVF QLHSSFNSPT
101: RVIEEPPFEV SESGWGEFEI AMTLHFHSDV CDKPLSLYHH LKLYPEDESG PLTMKKPVVV ESYDEIVFPD PSESFLARVQ NHPALTFPRL PSGYNLPAPM
201: QVEDTGKKKR GDTKDHSLGQ WFMSFSEADE LLQLAAARQQ VQAHIAKLRR QISLLEGQNQ TVKTGSDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)