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AT3G22270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Topoisomerase II-associated protein PAT1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Topoisomerase II-associated protein PAT1; BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT4G14990.1); Has 263 Blast hits to 260 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 15; Plants - 121; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2ReggNOG:ENOG410YXYMEMBL:CP002686EnsemblPlants:AT3G22270
EnsemblPlants:AT3G22270.1entrez:821797GeneID:821797GO:GO:0016853
Gramene:AT3G22270.1hmmpanther:PTHR21551hmmpanther:PTHR21551:SF4InParanoid:F4J077
iPTMnet:F4J077KEGG:ath:AT3G22270KO:K12617OMA:GSTCANA
PaxDb:F4J077PRIDE:F4J077ProteinModelPortal:F4J077Proteomes:UP000006548
RefSeq:NP_188866.1STRING:3702.AT3G22270.1TAIR:AT3G22270UniGene:At.6238
UniProt:F4J077
Coordinates (TAIR10) chr3:+:7874480..7877857
Molecular Weight (calculated) 85650.50 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.55
Length 782 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSDSRDLY NFVRASSLDK NSTLFDASQY EFFGQNLDDM ELGGLDDDGV IAPVLGHADD DEYHLFDKGE GAGLGSLSDM DDLATTFAKL NRVVTGPKHP
101: GVIGDRGSGS FSRESSSATD WTQDAELTSW LDEQDQEAKR WSSQPQSFAH SKPLYRTSSY PQQQPQLQHY NSEPIILPES NFTSFPPPGN RSPQASPGNL
201: HRAPSLPGGS QLTYSAPSPL SNSGFHLSGL SQGPHYGGNL TRYASCGPTL GNMVQPHWVT DPGHLHGDHS GLLHNLVQQQ HQQLPPRNAI MSQHLLALQQ
301: RQSYAQLAAL QSQLYSSYPS PSRKVPFGVG EVREHKHKSS HRSRKNRGLS QQTSDAASQK SETGLQFRSK HMTSEEIESI LKMQHSNSHS NDPYVNDYYH
401: QAKLAKKSAG SKAISHFYPA QLKDHQPRSR NSSEQHPQVH VDALGKITLP SVRRPHALLE VDSSPGFNDG SGDHKGSGKH LEQEPLVAAR VTIEDALGVL
501: IDIVDIDRTL QNTRPQDGGA QLKRKRQILL EGLATALQLA DPFSKTGQKS GMTAKDDIVF LRIATLPKGR KLLTKYLQLL VPGTENARVV CMAIFRHLRF
601: LFGGLPSDTL AAETISNLAK AVTVCVQAMD LRALSACLAA VVCSSEQPPL RPIGSSAGDG ASVVLISLLE RAAEVVVVPR VMHGNSNDGL WRASFDEFFN
701: LLTKYCRSKY DTIRGQNQGS AADVLELAIK REMPAELLRA SLRHTNDDQR NYLLNFGRKP SAISESASHA RGGQINSESV RG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)