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AT4G10590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.595
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 10
Curator
Summary (TAIR10)
encodes a member of the ubiquitin-specific protease family, UBP10
Computational
Description (TAIR10)
ubiquitin-specific protease 10 (UBP10); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 9 (TAIR:AT4G10570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5560eggNOG:KOG1870EMBL:AK316785EnsemblPlants:AT4G10590
EnsemblPlants:AT4G10590.1EnsemblPlants:AT4G10590.2entrez:826651ExpressionAtlas:B9DFI6
Gene3D:3.30.2230.10GeneID:826651GO:GO:0004843GO:GO:0006511
GO:GO:0016579Gramene:AT4G10590.1Gramene:AT4G10590.2hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF526InterPro:IPR001394InterPro:IPR006615InterPro:IPR018200
InterPro:IPR028889KEGG:ath:AT4G10590KO:K11835merops:C19.A03
OMA:IDENRWYPaxDb:B9DFI6Pfam:PF00443Pfam:PF06337
Pfam:Q93Y01Pfscan:PS50235Pfscan:PS51283PhylomeDB:B9DFI6
PRIDE:B9DFI6PROSITE:PS00972PROSITE:PS00973PROSITE:PS50235
PROSITE:PS51283ProteinModelPortal:B9DFI6RefSeq:NP_567363.1RefSeq:NP_849356.1
scanprosite:PS00972scanprosite:PS00973SMART:SM00695SMR:B9DFI6
STRING:3702.AT4G10590.1SUPFAM:0050384SUPFAM:SSF143791SUPFAM:SSF54001
TAIR:AT4G10590tair10-symbols:UBP10UniGene:At.10964UniGene:At.67146
UniProt:B9DFI6UniProt:Q93Y01
Coordinates (TAIR10) chr4:-:6538919..6543272
Molecular Weight (calculated) 102655.00 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.43
Length 910 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIPNSDFMI ENGVCDFPTT PEEEKRIVSE LITESEDNLK EGNLYFVISK RWYTSWEKYV EQSTKEYISG ESSEASRPGP IDNHDIIESE SDVNDPQLRR
101: LLMERVDYVL VPQEVWKRLV EWYSGGPPIE RKLICQGFYT RSYSVEVYPL CLMLTDGRDE SRTVIRLGKQ ASIRELYEKV CALTGVPQEK AHIWDYFDKR
201: KNGLLDSLSY KSLEESSLHM DQDILLEVDG SSSSQSAMSS TGNELALVPL EPSRSSVTIA GGPTLSNGHS TTSNFSLFPR ITSEDDGSNS LSILGKGEKG
301: GLAGLSNLGN TCFMNSALQC LAHTPPIVEY FLQDYSDDIN RDNPLGMCGE LAIAFGDLLK KLWSSGRNSV APRAFKTKLA RFAPQFSGYN QHDSQELLAF
401: LLDGLHEDLN KVKRKPYIEL KDSDSRPDDE VAEELWNYHK ARNDSVIVDV CQGQYKSTLV CPACGKISIT FDPFMYLSVP LPSTLTRSMT VTVFYCDGSH
501: LPMPYTVIVP KNGSIRDLIT ALGTACLLAE DESLLLAEVY DHKIFKYFEN PLDSLSSIKD DEHIVAYRLN QMPKGSGKAK LEILHGGQKR PILESVRGRD
601: VKLFGTPFVT YVNTEPLSGA DIDAVLSRFL SPLHKVHAPS KIHNGSENGH LPDATVDEAS EILSSPDTEI DDASDRELSF RIFLTDERGL NFKPLQSESS
701: ISLGIATRVL VEWNEGEHER YDSSYLSDLP EVHKTSFSAK KTRQESISLF SCLEAFLAEE PLGPDDMWFC PSCKEHRQAN KKLDLWKLPD ILVFHLKRFT
801: YSRYLKNKID TFVNFPVHDL DLSKYVKNKN DQSYLYELYA VSNHYGGLGG GHYTAYAKLI DDNEWYHFDD SHVSSVNESE IKNSAAYVLF YRRVRSETET
901: QTVEMSTDMD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)