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AT5G22030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-specific protease 8 (UBP8); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 5 (TAIR:AT2G40930.1); Has 10748 Blast hits to 7392 proteins in 262 species: Archae - 0; Bacteria - 6; Metazoa - 5718; Fungi - 1753; Plants - 1297; Viruses - 10; Other Eukaryotes - 1964 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G22030EnsemblPlants:AT5G22030.1entrez:832263hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF520Pfam:PF00443Pfscan:PS50235scanprosite:PS00972
scanprosite:PS00973SUPFAM:SSF54001tair10-symbols:UBP8
Coordinates (TAIR10) chr5:-:7290155..7296344
Molecular Weight (calculated) 103228.00 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.41
Length 913 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGTSPDESP DSTTQRIDSF NGEQRVYFVP LRWWKDAQDS MPSESVEKRE ILYTASCGSS YGGPMKLINN IFNSDILFDL RREGDALQNG ETGEASVSGR
101: DFALVSSDMW LQALKCIRSN DSFMEFFVFS ASVHSLENEF LKKRLRYHDD KNTEKGVKSF SAGGVDRGDV YPVQLRLSVL QETNSLAWSA RLSFDKMIKN
201: LNWILDNSVE CFRRACKIFS LDSEQLRIWD ISGQTTLFFE SDVSNSKDCQ QQADQEILLE LQIYGLSDSI KLKESKKEDG STQQTNGITN GMNGGTVFRF
301: GRSNSLSFLG KAGEAGTLGL TGLQNLGNTC FMNSSLQCLA HTPKLVDFFL GEYSKEINLD NPLGMKGEIA LAFGDLLRSL WAPGASTVAP RTFKAKLARF
401: APQFSGFNQH DSQELLAFLL DGLHEDLNRV KNKPYVEAKD GDGRPDAEVA DEYWRNHVAR NDSIIVDVCQ GQYKSTLVCP ICKKVSVMFD PFMYLSLPLP
501: CTSMRTMDLT VMSADGSSLP IPLTVNVPKF GKFEDLHKAL VTACSLPEEE TLLVTEVYNN RIIRFLEEPT DSLTLIRDGD KLVVYRLKKD ANNSPLIVYM
601: HQKLEEQFIS GKSSPTWKAF GIPLVSRLCD VENGSDVENL YLKLLSSFKM PTEFFTENLE NPTEEEATDK TDTDGTTSVE DTNSTDVKET TESLPDPVLR
701: LYLTDDRGNS IEAEMLKEKP VNKSKRLNVL ARWPVKELDV YDTCLLSSLP EVSKSGTKRP QESVSLFKCL EAFLTEEPLG PDDMWYCPGC KEHRQAIKKL
801: DLWRLPEILV IHLKRFSYSR FMKNKLEAYV DFPLDNLDLS SYISYKNGQT TYRYMLYAIS NHYGSMGGGH YTAYVHHGGD RWYDFDDSHV HQISQEKIKT
901: SAAYVLFYKR LVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)