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AT1G15970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10; Bacteria - 3170; Metazoa - 10; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G15970-MONOMEReggNOG:COG2818eggNOG:ENOG410IIKVEMBL:AC010924
EMBL:AK229092EMBL:BT029471EMBL:CP002684EnsemblPlants:AT1G15970
EnsemblPlants:AT1G15970.1entrez:838167Gene3D:1.10.340.30GeneID:838167
GO:GO:0006284GO:GO:0008725Gramene:AT1G15970.1hmmpanther:PTHR31116
hmmpanther:PTHR31116:SF1HOGENOM:HOG000220754InterPro:IPR005019InterPro:IPR011257
KEGG:ath:AT1G15970KO:K01246OMA:PKADPCYPfam:PF03352
PhylomeDB:Q9S9N7PIR:C86294Proteomes:UP000006548RefSeq:NP_173049.1
SMR:Q9S9N7SUPFAM:SSF48150TAIR:AT1G15970UniGene:At.43545
UniProt:Q9S9N7
Coordinates (TAIR10) chr1:-:5486544..5488494
Molecular Weight (calculated) 39303.00 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.53
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVPPRFRSV NSDEREFRSV LGPTGNKLQR KPPGMKLEKP MMEKTIIDSK DEKAKKPTTP ASPRTTLKQC SSLCSSILRK NSASMTASYS SDASSSCESS
101: PLSVASSSSC KKVVRRSGSV SSTRKLSVGK EEEKVSGDCF ADGRKRCAWI TPKADPCYVA FHDEEWGVPV HDDKKLFELL CLSGALAELS WTDILSRRHI
201: LREVFMDFDP VAVAELNDKK LTAPGTAAIS LLSEVKIRSI LDNSRHVRKI IAECGSLKKY MWNFVNNKPT QSQFRYQRQV PVKTSKAEFI SKDLVRRGFR
301: SVSPTVIYSF MQAAGLTNDH LIGCFRYQDC CVDAETTTTT KAKKKNERES DK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)