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AT2G44060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.833
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein, group 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein, group 2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to desiccation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT1G01470.1); Has 294 Blast hits to 286 proteins in 78 species: Archae - 4; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
DNASU:819011eggNOG:ENOG410IVJGeggNOG:ENOG410ZM32EMBL:AC004005
EMBL:BT024723EMBL:CP002685EnsemblPlants:AT2G44060EnsemblPlants:AT2G44060.1
EnsemblPlants:AT2G44060.2entrez:819011Gene3D:2.60.40.10GeneID:819011
GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0009269
GO:GO:0009506GO:GO:0009735GO:GO:0016020GO:GO:0046686
Gramene:AT2G44060.1Gramene:AT2G44060.2hmmpanther:PTHR31459hmmpanther:PTHR31459:SF2
HOGENOM:HOG000242248InterPro:IPR004864InterPro:IPR013783InterPro:IPR013990
KEGG:ath:AT2G44060OMA:WLGDDSIPfam:PF03168PhylomeDB:O80576
PIR:T00686Proteomes:UP000006548RefSeq:NP_181934.1RefSeq:NP_850408.1
SMART:SM00769SMR:O80576STRING:3702.AT2G44060.1SUPFAM:0051044
TAIR:AT2G44060UniGene:At.23563UniProt:O80576
Coordinates (TAIR10) chr2:+:18226922..18227988
Molecular Weight (calculated) 36038.30 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.31
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSEDKPEI ISRVVHQEGD VEIVDRSQKD KDEEKEEGKG GFLDKVKDFI HDIGEKLEGT IGFGKPTADV SAIHIPKINL ERADIVVDVL VKNPNPVPIP
101: LIDVNYLVES DGRKLVSGLI PDAGTLKAHG EETVKIPLTL IYDDIKSTYN DINPGMIIPY RIKVDLIVDV PVLGRLTLPL EKCGEIPIPK KPDVDIEKIK
201: FQKFSLEETV AILHVRLQNM NDFDLGLNDL DCEVWLCDVS IGKAEIADSI KLDKNGSGLI NVPMTFRPKD FGSALWDMIR GKGTGYTIKG NIDVDTPFGA
301: MKLPIIKEGG ETRLKKEDDD DDDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)