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AT1G63170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger, C3HC4 type (RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0; Bacteria - 6; Metazoa - 2543; Fungi - 730; Plants - 5047; Viruses - 25; Other Eukaryotes - 1196 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC010795
EMBL:AY058092EMBL:AY086095EMBL:CP002684EnsemblPlants:AT1G63170
EnsemblPlants:AT1G63170.1entrez:842621Gene3D:3.30.40.10GeneID:842621
Genevisible:Q8LDB8GO:GO:0008270GO:GO:0016021GO:GO:0016567
GO:GO:0016874Gramene:AT1G63170.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF186
HOGENOM:HOG000240958InParanoid:Q8LDB8InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT1G63170OMA:ANTMISFPaxDb:Q8LDB8Pfam:PF13639
Pfam:Q8LDB8Pfscan:PS50089PhylomeDB:Q8LDB8PIR:C96657
PRIDE:Q8LDB8PRO:PR:Q8LDB8PROSITE:PS50089ProteinModelPortal:Q8LDB8
Proteomes:UP000006548RefSeq:NP_564810.1SMART:SM00184SMR:Q8LDB8
SUPFAM:SSF57850TAIR:AT1G63170TMHMM:TMhelixUniGene:At.26656
UniPathway:UPA00143UniProt:Q8LDB8
Coordinates (TAIR10) chr1:+:23425574..23427073
Molecular Weight (calculated) 42678.90 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.13
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRETTTEAT PLILTDGGGG RRSVRRQGLR EAARLLRHAS SGRMMMREPS MLVREAAAEQ LEERQSDWAY SKPVVVLDFV WNLAFVVVAT AVLVLSSDEN
101: PNMPLRVWII GYGLQCMMHM VCVCVEYRRR NSRRRRDLSP RSSSSSSSSS SSMDEEEGLG LSRNSDERYL ELGQLENENN SFAKHLESAN TMISFIWWVI
201: GFYWVSSGGQ ELAQGSPQLY WLCIVFLGFD VFFVVFCVAL ACVIGIAVCC CLPCIIAVLY AVAEQEGASK EDIDQLTKFK FRKVGDTMKH TVDEEQGQGD
301: SGGVMTECGT DSPVEHALPH EDAECCICLS AYEDETELRE LPCGHHFHCG CVDKWLYINA TCPLCKYNIL KSSNYEEGEE V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)