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AT1G05150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23110452 (2012): plasma membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:22182420 (2012): endoplasmic reticulum
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding tetratricopeptide family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding tetratricopeptide family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT2G32450.1); Has 35451 Blast hits to 16647 proteins in 1701 species: Archae - 1586; Bacteria - 18304; Metazoa - 4207; Fungi - 680; Plants - 951; Viruses - 0; Other Eukaryotes - 9723 (source: NCBI BLink).
Protein Annotations
BioGrid:24547eggNOG:ENOG410IQRBeggNOG:ENOG41102ANEMBL:AC000098
EMBL:AK229432EMBL:CP002684EnsemblPlants:AT1G05150EnsemblPlants:AT1G05150.1
entrez:839312Gene3D:1.10.238.10Gene3D:1.25.40.10GeneID:839312
Genevisible:O23052GO:GO:0005509GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0005886GO:GO:0008270GO:GO:0009506
GO:GO:0016757Gramene:AT1G05150.1hmmpanther:PTHR23083hmmpanther:PTHR23083:SF380
HOGENOM:HOG000239938InParanoid:O23052InterPro:IPR002048InterPro:IPR011990
InterPro:IPR011992InterPro:IPR013026InterPro:IPR019734iPTMnet:O23052
KEGG:ath:AT1G05150ncoils:CoilOMA:HDGGLNRPaxDb:O23052
Pfam:O23052Pfam:PF07719Pfam:PF13414Pfam:PF13424
Pfscan:PS50005Pfscan:PS50222Pfscan:PS50293PhylomeDB:O23052
PIR:G86185PRIDE:O23052PRO:PR:O23052PROSITE:PS50005
PROSITE:PS50222PROSITE:PS50293ProteinModelPortal:O23052Proteomes:UP000006548
RefSeq:NP_172007.1SMART:SM00028SMR:O23052STRING:3702.AT1G05150.1
SUPFAM:SSF47473SUPFAM:SSF48452SwissPalm:O23052TAIR:AT1G05150
UniGene:At.20887UniGene:At.71821UniProt:O23052
Coordinates (TAIR10) chr1:-:1484280..1486706
Molecular Weight (calculated) 90174.30 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.42
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)