AT3G54080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.739 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Concanavalin A-like lectin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Concanavalin A-like lectin family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT5G01090.1); Has 189 Blast hits to 188 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20025397..20026449 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39555.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASFILSRSL LVLLLSLTAL LSSISISEAT SSFSFTSSGK NASFESEDFA LYGDAKLVDG GSSIQLTDSV SHGGGRVIYK KPIESMNNIK FEYFTGFSTF 101: FSFSISPSRG GRLGFVVFPV NETFDHSLFQ VKFDTFDSFT QIGDSNVAVI VDGATVSERI RNFTIANLEK TEKVLLYAWI NYQAGGKFLE VRLSKSKSFE 201: SVLPLMFDQI DLSQMLRDED EFMVAVNSYS GNVNLHSWSL EVRHSEYEHS WAPVLLEEQL RKEEQLRKEE AAKKRTSDRM WEVVTCFVMT FGSTGLVFFA 301: MMHIYAAFKR NNLAMVMQEE CGIKTKEFGY KKMEKMEVVT SNADAKQERK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)