suba logo
AT1G51570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 5701 Blast hits to 4098 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 3509; Fungi - 242; Plants - 1514; Viruses - 0; Other Eukaryotes - 436 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEBIeggNOG:ENOG410XRQNEMBL:AC025294EMBL:CP002684
EnsemblPlants:AT1G51570EnsemblPlants:AT1G51570.1entrez:841582Gene3D:2.60.40.150
GeneID:841582GO:GO:0005618GO:GO:0005783GO:GO:0009506
GO:GO:0016021GO:GO:0016757Gramene:AT1G51570.1hmmpanther:PTHR10024
hmmpanther:PTHR10024:SF243HOGENOM:HOG000238008InterPro:IPR000008InterPro:IPR013583
KEGG:ath:AT1G51570ncoils:CoilOMA:VIYPELIPfam:PF00168
Pfam:PF08372Pfscan:PS50004PhylomeDB:Q9C8H3PIR:C96554
PROSITE:PS50004Proteomes:UP000006548RefSeq:NP_175568.1SMART:SM00239
SMR:Q9C8H3STRING:3702.AT1G51570.1SUPFAM:SSF49562TAIR:AT1G51570
TMHMM:TMhelixUniGene:At.24967UniProt:Q9C8H3
Coordinates (TAIR10) chr1:-:19122358..19124688
Molecular Weight (calculated) 89159.40 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.23
Length 776 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)