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AT3G13510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 759 Blast hits to 705 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 734; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKC2eggNOG:ENOG410Z0AYEMBL:AP000603EMBL:AY075687
EMBL:BT001136EMBL:CP002686EnsemblPlants:AT3G13510EnsemblPlants:AT3G13510.1
entrez:820553GeneID:820553Gramene:AT3G13510.1hmmpanther:PTHR31589
hmmpanther:PTHR31589:SF24InterPro:IPR004314InterPro:IPR025521KEGG:ath:AT3G13510
OMA:ATLNVWEPfam:PF03080Pfam:PF14365PhylomeDB:Q9LJE0
Proteomes:UP000006548RefSeq:NP_566457.1STRING:3702.AT3G13510.1TAIR:AT3G13510
TMHMM:TMhelixUniGene:At.22228UniProt:Q9LJE0
Coordinates (TAIR10) chr3:+:4403776..4405741
Molecular Weight (calculated) 47357.60 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.59
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAEHFSLVK FNRGFFVCLW VMLSLSCAAA SYGSSRQKFE VKKHLNRLNK PPVKTIQSPD GDIIDCIPIS KQPAFDHPFL KDHKIQMRPS YHPEGLFDDN
101: KVSAEPKGKE THIPQLWHRY GKCTEGTIPM RRTREDDVLR ASSVKRYGKK KHRSVPIPKS AEPDLINQNG HQHAIAYVEG DKYYGAKATL NVWEPKIQNT
201: NEFSLSQIWL LGGSFGQDLN SIEAGWQVSP DLYGDNNTRL FTYWTSDAYQ ATGCYNLLCS GFIQINSDIA MGASISPVSG YRNSQYDISI LIWKDPKEGH
301: WWMQFGNGYV LGYWPSFLFS YLTESASMIE WGGEVVNSQS EGHHTWTQMG SGHFPEEGFS KASYFRNIQV VDGSNNLKAP KGLGTFTEKS NCYDVQTGSN
401: DDWGHYFYYG GPGKNKNCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)