AT5G56530.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:22889382..22891439 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47233.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAAHFSKER VFRGFLVWFC FWGLMSLTCA GRLSVSRQNF EVHKHLNRLN KPAVKSIQSP DGDIIDCVHI SKQPAFDHPF LKDHKIQMGP SYTPESLFGE 101: SKVSEKPKES VNPITQLWHQ NGVCSEGTIP VRRTKKEDVL RASSVKRYGK KKHLSVPLPR SADPDLINQS GHQHAIAYVE GGKFYGAKAT INVWEPKVQS 201: SNEFSLSQLW ILGGSFGQDL NSIEAGWQVS PDLYGDNNTR LFTYWTSDAY QATGCYNLLC SGFIQINSQI AMGASISPVS GFHNPQYDIS ITIWKDPKEG 301: HWWMQFGDGY VLGYWPSFLF SYLADSASIV EWGGEVVNME EDGHHTTTQM GSGQFPDEGF TKASYFRNIQ VVDSSNNLKE PKGLNTFTEK SNCYDVEVGK 401: NDDWGHYFYY GGPGRNPNCQ |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)