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AT1G66260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ALWAYS EARLY 4 (TAIR:AT5G37720.1); Has 6319 Blast hits to 5868 proteins in 467 species: Archae - 0; Bacteria - 316; Metazoa - 3146; Fungi - 1267; Plants - 941; Viruses - 29; Other Eukaryotes - 620 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JAWeggNOG:KOG0533EMBL:AC066691EMBL:AF410310
EMBL:AJ278492EMBL:AY149925EMBL:CP002684EnsemblPlants:AT1G66260
EnsemblPlants:AT1G66260.1EnsemblPlants:AT1G66260.2entrez:842943Gene3D:3.30.70.330
GeneID:842943Genevisible:Q94EH8GO:GO:0000166GO:GO:0003723
GO:GO:0005654GO:GO:0005730GO:GO:0051028Gramene:AT1G66260.1
Gramene:AT1G66260.2hmmpanther:PTHR19965hmmpanther:PTHR19965:SF33HOGENOM:HOG000239962
InParanoid:Q94EH8InterPro:IPR000504InterPro:IPR012677InterPro:IPR025715
KEGG:ath:AT1G66260KO:K12881OMA:KRYAIHYPaxDb:Q94EH8
Pfam:PF00076Pfam:PF13865Pfam:Q94EH8Pfscan:PS50102
PhylomeDB:Q94EH8PIR:F96687PRIDE:Q94EH8PRO:PR:Q94EH8
PROSITE:PS50102ProteinModelPortal:Q94EH8Proteomes:UP000006548RefSeq:NP_001185329.1
RefSeq:NP_564871.1SMART:SM00360SMART:SM01218SMR:Q94EH8
STRING:3702.AT1G66260.1SUPFAM:SSF54928TAIR:AT1G66260UniGene:At.25606
UniProt:Q94EH8
Coordinates (TAIR10) chr1:-:24695895..24697883
Molecular Weight (calculated) 31320.30 Da
IEP (calculated) 11.50
GRAVY (calculated) -0.75
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDALNMTLD EIVKKSKSER SAAARSGGKG VSRKSGRGRG GPNGVVGGGR GGGPVRRGPL AVNTRPSSSF SINKLARRKR SLPWQNQNDL YEETLRAVGV
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)