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AT5G53050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 0.569
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INNAeggNOG:ENOG4110FUSEMBL:CP002688EnsemblPlants:AT5G53050
EnsemblPlants:AT5G53050.1entrez:835385ExpressionAtlas:F4KIZ7Gene3D:3.40.50.1820
GeneID:835385GO:GO:0016787Gramene:AT5G53050.1hmmpanther:PTHR10992
hmmpanther:PTHR10992:SF699InterPro:IPR000073InterPro:IPR029058MEROPS:S33.A66
PaxDb:F4KIZ7Pfam:PF00561PhylomeDB:F4KIZ7PRIDE:F4KIZ7
PRINTS:PR00111ProteinModelPortal:F4KIZ7Proteomes:UP000006548RefSeq:NP_200117.2
SMR:F4KIZ7STRING:3702.AT5G53050.2SUPFAM:SSF53474TAIR:AT5G53050
UniGene:At.29576UniGene:At.47206UniProt:F4KIZ7
Coordinates (TAIR10) chr5:-:21510901..21513432
Molecular Weight (calculated) 34344.50 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.11
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFCEVVKED VGPETTLNNA AIKIFYRTYG HGPIKALLII GLAGTHESWG PQIMGLTGTD KPNDDDDDDG GIVSDDSGIE VCAFDNRGMG RSSVPTHKSE
101: YTTTIMANDS ISLLDHLGWK KAHIIGHSMG AMIACKLAAM APERVLSLAL LNVTGGGFEC FPKLDRKSLS IAIRFLKAKT PEQRAAVDLD THYSKDYLEE
201: SVGTNTRRAI LYQQYVKGIS ETGMQSKYGF DGQINACWLH KITKVEIELI RSAGFLVSVI HGRHDVIAQI CYARRLAQRL YPVARMVDLH GGHLVSHERT
301: EEVLLLIKLC SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)