AT3G19830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: N-terminal-transmembrane-C2 domain type 5.1 (TAIR:AT1G50260.1); Has 1308 Blast hits to 1143 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 350; Fungi - 235; Plants - 647; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6886338..6889974 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76958.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 693 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILQSSSSCS SFDFPSFVSR RLLCPCSNEH GLIVFSDGFT KRRRILRRVH AANSNSRFVS SGIRTDSKNI GLADSARRAA RSLVVTRFSN EFEDEEASSS 101: SQESAIQGDR NNFTNFREDP IVDKLRTQLG VIHPIPSPPI SRNAIGLFAF FFFVGVICDK LWTWRKRRRQ MAGDGGQRGA GPWAQVPTSF SLSLEKDLQR 201: KESVEWVNMV LVKLWKVYRG GIENWLVGLL QPVIDDLKKP DYVQRVEIKQ FSLGDEPLSV RNVERRTSRR VNDLQYQIGL RYTGGARMLL MLSLKFGIIP 301: VVVPVGIRDF DIDGELWVKL RLIPSAPWVG AASWAFVSLP KIKFELAPFR LFNLMGIPVL SMFLTKLLTE DLPRLFVRPK KIVLDFQKGK AVGPVSEDLK 401: SGEMQEGNKD FVGELSVTLV NAQKLPYMFS GRTDPYVILR IGDQVIRSKK NSQTTVIGAP GQPIWNQDFQ FLVSNPREQV LQIEVNDCLG FADMAIGIGE 501: VDLESLPDTV PTDRFVSLRG GWSLFGKGST GEILLRLTYK AYVEDEEDDK RNAKAIYADA SDDEMSDSEE PSSFVQNDKI PSDDIGQESF MNVLSALILS 601: EEFQGIVSSE TGNNKVDDGE SSVSPVPSMS GADSESRPKD AGNGDVSDLE VKNAKSDRGS INNGGLALLW FGVITSVLVL VAINMGGSSF FNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)