AT3G19970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G18245.1); Has 401 Blast hits to 400 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 77; Plants - 116; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6959644..6961367 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47098.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSLSGIIQR PLVAAAAVIT ASVSADVSER FSSLRSLVRG SESEQIAPSV SGLVQEERSL WVSQVSASKL ADLSFVSRIC VPVPNVDLLA SNPSCSLATS 101: VTSLSALRSV YQSAELAKAS KPVAFTIGAS LVVPDISYRW HLPEPSAVDM SGSSSCVSEK NRTVVVLLGW LGSKQKHLKK YADWYTSKGY HVITFTLPMN 201: EIMSYQVGGK AEKNIESLVN HLADWLDEEQ KKNLVFHTFS NTGWLTYGAI LEKFQKQDSS LMGRVKGCIV DSAPVAAADP TVWASGFSAA FLKKSSVATK 301: GSASSSYESN GINISQPKPA ATETALLLVL EKFFAVILNL PKVNRRLADV LDTLSTAQPS CPQLYIYSSA DRVIPVEQVE SFIVEQRKAG HEVRACNFIS 401: SPHVDHFRSN PELYTAELNH FMNNFVLSCC HHSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)