AT5G52410.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.749 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:21276996..21279293 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 57803.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFAALQALKV IESDALPYDL CTRREFARWV VSASNTLSRN SASKVYPAMY IENVTELAFD DITPEDPDFP FIQGLAEAGL ISSKLSNNNM PSSESSRVTF 101: SPESPLTRQD LLSWKMALEF RQLPEADSKK LYQLSGFLDI DKINPEAWPA LIADLSAGEH GITALSFGRT RLFQPSKAVT KAQTAVSLAI GDAFEVVGEE 201: LARIEAEAMA ENVVCAHNEL VAQVEKDINA SFEKELLREK EIVDAVEKLA EEAKSELARL RVEKEEETLA LERERTSIET EMEALARIRN ELEEQLQSLA 301: SNKAEMSYEK ERFDRLQKQV EDENQEILRL QNELEVERNA LSIARDWAKD EARRAREQAK VLEEARGRWE KYGLKVIVDS DLHEQTTKTE STWLNAGKQN 401: HVEGTMKRAG NLIAKLKKMA KDVGEKSREV IYLIIEKISL LISALKQQVH GMENKAKDLK IKTKSKAEEV WRQTSLRADE IRNISIVKAK ETVEEFKDRV 501: GKLGEKFKSK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)