AT1G76380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 6842 Blast hits to 5628 proteins in 259 species: Archae - 0; Bacteria - 8; Metazoa - 4078; Fungi - 1212; Plants - 647; Viruses - 2; Other Eukaryotes - 895 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28651416..28654536 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64854.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.43 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||||||
| Length | 579 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEVADNNTL MKRKKKGRPS LLDLQKRALK QQQLLQRRNP NEENEEELRS SSRNPNFSNR SNRRRNSNSE DDDDERRDKK HRLLHGLNSH EGRDSSNSKS 101: GGGDLDSDAR NRRKIDGSDN TGEKASKATD ILLQRSLVES TPLPDKKLLF FILDRVQKKD TYGVYSDPAD PEELPDYYEI IKNPMDFTTL RKKLESGAYT 201: TLEQFEQDVF LICTNAMEYN SADTVYYRQA RAMLELAKKD FGNLRQESDG EEPVSLSQQP KVVKRGRPPG SGLKKQLEQS LIDRTTSDIS ADAAAFTYAG 301: DSSRLSGSYN LRKNPPSYGF RHAETSVRIN HNSENQSGLL IDWEKEFPPS VVKAVNKYGM KNVDENRRDT YNQNSASLQD SSIFTLLDDN LKQLTPVGLK 401: AEYGYARSLA RYAANIGPVA WTFANVRIEK LLPTGTEFGP GWVGENPENP PQQQNLMSGK QKCSNDYASD DHHQSSRIMS PSTSVSSSII GNIHSSHESK 501: ESVQVLNQET EINGLVRGSS GFNHKPNQML ETAGSQQGNI KQEFQRLPPD LNARLSSPNS PGSNHQAGSS QHPDLALQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)