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AT1G76390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 2889 Blast hits to 2662 proteins in 212 species: Archae - 0; Bacteria - 26; Metazoa - 333; Fungi - 292; Plants - 2003; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AC012394
EMBL:AK226857EMBL:CP002684EnsemblPlants:AT1G76390EnsemblPlants:AT1G76390.1
EnsemblPlants:AT1G76390.2entrez:843971Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:843971Genevisible:Q9SFX2GO:GO:0004842GO:GO:0005886
GO:GO:0016874Gramene:AT1G76390.1Gramene:AT1G76390.2hmmpanther:PTHR22849
hmmpanther:PTHR22849:SF4HOGENOM:HOG000241783InParanoid:Q9SFX2InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
KEGG:ath:AT1G76390ncoils:CoilOMA:HMSEELAPaxDb:Q9SFX2
Pfam:PF04564Pfam:Q9SFX2Pfscan:PS50176Pfscan:PS51698
PhylomeDB:Q9SFX2PIR:E96791PRIDE:Q9SFX2PRO:PR:Q9SFX2
PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9SFX2Proteomes:UP000006548
RefSeq:NP_001077833.1RefSeq:NP_177765.1SMART:SM00185SMART:SM00504
SMR:Q9SFX2STRING:3702.AT1G76390.1SUPFAM:SSF48371SUPFAM:SSF57850
TAIR:AT1G76390UniGene:At.16778UniGene:At.66969UniPathway:UPA00143
UniProt:Q9SFX2
Coordinates (TAIR10) chr1:+:28655914..28658531
Molecular Weight (calculated) 89113.80 Da
IEP (calculated) 5.00
GRAVY (calculated) 0.02
Length 811 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGSGSWDGS QSDNSSQFEP GIDNIYEAFI CPLTKQVMHN PVTLENGQTF EREAIEKWFQ ECRENGQPLS CPITSKELSI TDLSPSIALR NTIEEWRARN
101: DALKLDIARQ SLYLGNAETN ILLALKNVRE ICRNIRKIRQ RVCNPQLVRL ITDMLKSSSH EVRCKALQTL QVVVEGDEES KAIVAEGDTV RTIVKFLSQE
201: PSKGREAAVS VLFELSKSEA LCEKIGSIHG AIILLVGLTS SKSENVSTVE KADKTLTNLE RSEENVRQMA INGRLQPLLA KLLEGSPETK VSMAFYLGVL
301: ALNNDVKVIV AQTVGSSLID LMRTRDMSQR EAALGALNNI SSFEGSAKLL INTGILPPLI KDLFYVGPNQ LPIRLKEVSA TILANIVNIG YDFDKVPVGP
401: HHQTLVSEEI VENLLQLTSN TGPEIQGKLL AVLVGLTSCP NSVINVVSAI RNSAAIISLV QFVEIHENDD LRLASIKLLH NISPHMSEEL ANALRSTVGQ
501: LGSLVSIISE NTPTITEEQA AAAGLLAELP ERDLVLTMRL LREGAFEKII SKIVGIRQGE IRGIRFERTF LEGLVSILAR ITFALTKETD ATLFCCEKNL
601: PSLFLDLLQS NSQDNIQRAS ATALENLSLE SKNLTKIPEL PPPTYCVSIF SCLSKPPVVL GICKIHQGIC SVRESFCLVE GQAVDKLVDL LDHENDKVVG
701: PALAALSTLL EDGLDVVQGV RLIDEADGIT PILNVLLENR TENLRIRAVW MVERILRIEE IAREVGEEQN VTAALVDAFQ NADFRTRQIA EKALRHIDKI
801: PNFSGIFTNI G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)