suba logo
AT1G10410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1336)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1336); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT1G59650.1); Has 292 Blast hits to 292 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 234; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGM5eggNOG:ENOG4111ZZYEMBL:AY094392EMBL:CP002684
EnsemblPlants:AT1G10410EnsemblPlants:AT1G10410.1entrez:837581GeneID:837581
Gramene:AT1G10410.1hmmpanther:PTHR31558hmmpanther:PTHR31558:SF3HOGENOM:HOG000240431
InterPro:IPR009769KEGG:ath:AT1G10410OMA:KEFAPSHPfam:PF07059
PhylomeDB:Q8LPT2Proteomes:UP000006548RefSeq:NP_172512.1STRING:3702.AT1G10410.1
TAIR:AT1G10410UniGene:At.42181UniProt:Q8LPT2
Coordinates (TAIR10) chr1:-:3416842..3419264
Molecular Weight (calculated) 54875.10 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.56
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGCVSTPKS CVGAKLRSSK RRKSRRRRKI QRKRAAVSSR LSDGSFDNLD HHHRNFSNPS SRATGEDAWF ESNVAFETDC DDDFHSVHED ALSLNGSERV
101: SLSSTTTTSS TRDTDSNEVM SQSKSDGDLN DTNQPDLIDS SADEGLLENC RILPSNCLPC LNTTTVPSID KRRSLSSSPP SSRKKSSLRL SYKWREGHAS
201: GALFLSKMQL KRPIAGSQVP FCPIDKKMLD CWSTIDPNSF RVRGKTYLRE KKKEFAPSHA AYNPFGVDVF LSEHKIHHVA QYVKLPVTTT STKLPSILVV
301: NVQIPLYPTA IFQGESDGEG MNIVLYFKLS DNYSKELPLH FQESIRRLID DEVEKVKGFP LDTTAPFRER LKILGRVANV DDLHLSGPEK KLMQAYNEKP
401: VLSRPQHEFY LGDNYFEIDI DMHRFGYISR KGFETFIDRL KICVLDVGLT IQGNKPEELP EQILCCVRLN GIDFMNYHQL TQELL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)