AT1G58200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MSCS-like 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MSCS-like 3 (MSL3); FUNCTIONS IN: ion channel activity; INVOLVED IN: plastid organization, response to osmotic stress; LOCATED IN: membrane, plastid envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: MSCS-like 2 (TAIR:AT5G10490.1); Has 6506 Blast hits to 5934 proteins in 1329 species: Archae - 154; Bacteria - 2583; Metazoa - 875; Fungi - 404; Plants - 332; Viruses - 16; Other Eukaryotes - 2142 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21548370..21552488 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74193.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 678 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMRTVALPL SHDLNVHKIH EASGFHNSAA GKNRVYLTRT GLSSCATRQD VWSLQLLESL SGSIVPVSSR CNAFVCRSAL SPGNGNEGPI LKSTAVIFTR 101: VYDALGGNPH LVKLIPAVGI LAFATWGLRP LLRLARTTLF EKGNDANSQK SSTQYIVVSY LQPLLLWSGA ILLCRTLDPI VLPSSAGQAI KQRLLIFARS 201: ISTVLAFSCC LSSLLQQVQK FFMETNNPAD TRNMGFSFAG KAVYTAAWVA AASLFMELLG FSTQKWLTAG GLGTVLLTLA GREILTNFLS SIMIHATRPF 301: VLNEWIQTKI GGYEVSGTVE QVGWWSPTII RGDDREAVHI PNHQFSVNIV RNLTQKTHWR IKTHLAISHL DVSKINNIVA DMRKVLSKNP QIEQQKIHRR 401: VFLEDIDPEN QALRILISCF VKTSRFEEYL CVKEAVLLDL LTVIRHHGAR LATPIRTVQR MRNEAEVDTA GFSDIVFNQA AMNRRYMLIE PSYKINSDDN 501: SKSPSPSPGQ KSPSPGQKSE ERDLQEEPSE TKAETENNGS VPVSNAKKEN QKAALGSNSN TGTKGSSTST SDQPVAQKSE EKKKESVGDP HKAEKDEVSD 601: DEATIEQTLK SKAKQGSEKN NGESKARDGG GSGTSSLLEE NLVLGVALDG SKRTLPIDEE HKASGALMDS EELGIGSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)