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AT5G16650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.540
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G33735.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:ENOG410IQB3EMBL:AB008270EMBL:AF385723
EMBL:AY085680EMBL:AY143881EMBL:CP002688EnsemblPlants:AT5G16650
EnsemblPlants:AT5G16650.1entrez:831527Gene3D:1.10.287.110GeneID:831527
Gramene:AT5G16650.1hmmpanther:PTHR24078HOGENOM:HOG000283406InterPro:IPR001623
KEGG:ath:AT5G16650OMA:TGIYEIDPfam:PF00226Pfscan:PS50076
PhylomeDB:Q9FMD2PRINTS:PR00625PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_197168.1SMART:SM00271SMR:Q9FMD2STRING:3702.AT5G16650.1
SUPFAM:SSF46565TAIR:AT5G16650UniGene:At.20246UniProt:Q9FMD2
Coordinates (TAIR10) chr5:-:5463446..5465075
Molecular Weight (calculated) 15017.60 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.87
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDNDKSPPK DYYKILEVDY DATEELIRLN YRKLALKWHP DKHKGDSAAT EKFQEINEAY NVLMDPAKRF EYDFTGIYEI HKYTLREYLA RFKGMILTCN
101: GLGISQSSSP WTHQLAETTK QQTSKDTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)