AT1G24330.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:8631779..8634835 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 85323.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 771 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDVSELEENL FAASDAKLHG DMCKELSAVY CKVLSIFPSL EEARPRSKSG IQTLCSLHIA LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKSALIDS 101: LRRVEDIVPS SIGSQILDIV GELEHTKFLL DPSEKEVGDR IIALLQQGKK FDNGSDSTEL EIFHQAATRL SITSSRSALA ERRALKKVID RARVEEDKRK 201: ESIVAYLLHL MRKYSKLFRS EMMDENDSPC STPCSPTGQG PNEDRVNAFG RQLSKFGSIN YKPMNSRKSG QMPIPPEELR CPISLQLMYD PVIIASGQTY 301: ERVCIEKWFS DGHNSCPKTQ QQLPHLSLTP NYCVKGLIAS WCEQNGITVP TGPPESLDLN YWRLAMSDSE SPNSKSVDSV GLCTPKDIRV VPLEESSTIE 401: SERQQKEKNN APDEVDSEIN VLEGYQDILA IVDKEEDLAK KCKVVENVRI LLKDNEEARI LMGANGFVEA FLQFLESAVH DNNAAAQETG AMALFNLAVN 501: NNRNKELMLT SGVIPLLEKM ISCSQSQGPA TALYLNLSCL EKAKPVIGSS QAVSFFVNLL LQDTKTQCKL DALHALYNLS TYSPNIPTLL SSNIIKSLQV 601: LASTGNHLWI EKSLAVLLNL ASSREGKEEM ITTQGMISTL ATVLDTGDTV EQEQAVSCLV ILCTGSESCI QMVLQEGVIP SLVSISVNGS PRGRDKSQKL 701: LMLFREQRHR DQPSPNKEEA PRKTVSAPMA IPAPVSAPES EVKPLTKSIS RRKTMTRPFS FLWKKSHSIH H |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)