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AT1G24330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410ITMPeggNOG:ENOG410XQ5KEMBL:AC002396
EMBL:CP002684EnsemblPlants:AT1G24330EnsemblPlants:AT1G24330.1entrez:839049
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:839049Genevisible:O48700
GO:GO:0004842GO:GO:0009507GO:GO:0016874Gramene:AT1G24330.1
hmmpanther:PTHR22849hmmpanther:PTHR22849:SF8HOGENOM:HOG000082565InParanoid:O48700
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024KEGG:ath:AT1G24330OMA:SAVYCKVPaxDb:O48700
Pfam:O48700Pfam:PF04564Pfscan:PS50176Pfscan:PS51698
PhylomeDB:O48700PIR:T00664PRIDE:O48700PRO:PR:O48700
PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:O48700Proteomes:UP000006548
RefSeq:NP_173843.2SMART:SM00185SMART:SM00504SMR:O48700
SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT1G24330UniGene:At.41444
UniPathway:UPA00143UniProt:O48700
Coordinates (TAIR10) chr1:+:8631779..8634835
Molecular Weight (calculated) 85323.50 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.27
Length 771 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVSELEENL FAASDAKLHG DMCKELSAVY CKVLSIFPSL EEARPRSKSG IQTLCSLHIA LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKSALIDS
101: LRRVEDIVPS SIGSQILDIV GELEHTKFLL DPSEKEVGDR IIALLQQGKK FDNGSDSTEL EIFHQAATRL SITSSRSALA ERRALKKVID RARVEEDKRK
201: ESIVAYLLHL MRKYSKLFRS EMMDENDSPC STPCSPTGQG PNEDRVNAFG RQLSKFGSIN YKPMNSRKSG QMPIPPEELR CPISLQLMYD PVIIASGQTY
301: ERVCIEKWFS DGHNSCPKTQ QQLPHLSLTP NYCVKGLIAS WCEQNGITVP TGPPESLDLN YWRLAMSDSE SPNSKSVDSV GLCTPKDIRV VPLEESSTIE
401: SERQQKEKNN APDEVDSEIN VLEGYQDILA IVDKEEDLAK KCKVVENVRI LLKDNEEARI LMGANGFVEA FLQFLESAVH DNNAAAQETG AMALFNLAVN
501: NNRNKELMLT SGVIPLLEKM ISCSQSQGPA TALYLNLSCL EKAKPVIGSS QAVSFFVNLL LQDTKTQCKL DALHALYNLS TYSPNIPTLL SSNIIKSLQV
601: LASTGNHLWI EKSLAVLLNL ASSREGKEEM ITTQGMISTL ATVLDTGDTV EQEQAVSCLV ILCTGSESCI QMVLQEGVIP SLVSISVNGS PRGRDKSQKL
701: LMLFREQRHR DQPSPNKEEA PRKTVSAPMA IPAPVSAPES EVKPLTKSIS RRKTMTRPFS FLWKKSHSIH H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)