AT1G22540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72140.1); Has 7676 Blast hits to 7510 proteins in 1439 species: Archae - 0; Bacteria - 3907; Metazoa - 586; Fungi - 484; Plants - 2183; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:7964202..7966222 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60654.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 557 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSISGAVDEA GTPLLAVTVD YRNKPAVKSS SGGWRSAGFI IGVEVAERFA YYGISSNLIT YLTGPLGQST AAAAANVNAW SGTASLLPLL GAFVADSFLG 101: RFRTILAASA LYIVGLGVLT LSAMIPSDCK VSNLLSSCSP RFQVITFFSA LYLVALAQGG HKPCVQAFGA DQFDEKEPEE CKAKSSFFNW WYFGMCFGTL 201: TTLWVLNYIQ DNLSWALGFG IPCIAMVVAL VVLLLGTCTY RFSIRREDQS PFVRIGNVYV AAVKNWSVSA LDVAAAEERL GLVSCSSSQQ FSFLNKALVA 301: KNGSCSIDEL EEAKSVLRLA PIWLTCLVYA VVFAQSPTFF TKQGATMERS ITPGYKISPA TLQSFISLSI VIFIPIYDRV LIPIARSFTH KPGGITMLQR 401: IGTGIFLSFL AMVVAALVEM KRLKTAADYG LVDSPDATVP MSVWWLVPQY VLFGITDVFA MVGLQEFFYD QVPNELRSVG LALYLSIFGI GNFLSSFMIS 501: IIEKATSQSG QASWFANNLN QAHLDYFYWL LACLSFIGLA SYLYVAKSYV SKRLDTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)