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AT3G13810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : indeterminate(ID)-domain 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
indeterminate(ID)-domain 11 (IDD11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 7 (TAIR:AT1G55110.1); Has 54110 Blast hits to 21919 proteins in 332 species: Archae - 0; Bacteria - 8; Metazoa - 48498; Fungi - 430; Plants - 766; Viruses - 2; Other Eukaryotes - 4406 (source: NCBI BLink).
Protein Annotations
EMBL:AB028610EMBL:AF361797EMBL:AJ630504EMBL:AY091693
EMBL:AY568673EMBL:CP002686EnsemblPlants:AT3G13810EnsemblPlants:AT3G13810.1
EnsemblPlants:AT3G13810.2EnsemblPlants:AT3G13810.3entrez:820593ExpressionAtlas:Q9LRW7
Gene3D:3.30.160.60GeneID:820593Genevisible:Q9LRW7GO:GO:0003677
GO:GO:0006351GO:GO:0006355GO:GO:0046872hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF31HOGENOM:HOG000237608InParanoid:F4JEJ5InterPro:IPR007087
InterPro:IPR013087InterPro:IPR015880InterPro:IPR022755iPTMnet:Q9LRW7
KEGG:ath:AT3G13810OMA:QQSNDHIPfam:PF12171Pfam:Q9LRW7
Pfscan:PS50157PhylomeDB:Q9LRW7PRIDE:Q9LRW7PRO:PR:Q9LRW7
PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9LRW7Proteomes:UP000006548
RefSeq:NP_001189882.1RefSeq:NP_001189883.1RefSeq:NP_187997.1scanprosite:PS00028
SMART:SM00355SMR:Q9LRW7SUPFAM:SSF57667TAIR:AT3G13810
tair10-symbols:AtIDD11tair10-symbols:IDD11UniGene:At.28709UniProt:Q9LRW7
Coordinates (TAIR10) chr3:+:4544941..4547300
Molecular Weight (calculated) 56729.90 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.88
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)