suba logo
AT4G24100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.535
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G10730.1); Has 125358 Blast hits to 123605 proteins in 4454 species: Archae - 114; Bacteria - 14309; Metazoa - 46798; Fungi - 12057; Plants - 31507; Viruses - 632; Other Eukaryotes - 19941 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24100-MONOMEReggNOG:ENOG410XSWSeggNOG:KOG0582EMBL:AY091096
EMBL:AY133743EMBL:CP002687EnsemblPlants:AT4G24100EnsemblPlants:AT4G24100.1
entrez:828510GeneID:828510GO:GO:0004672GO:GO:0005524
GO:GO:0005886Gramene:AT4G24100.1hmmpanther:PTHR24361hmmpanther:PTHR24361:SF363
HOGENOM:HOG000234203IntAct:Q8RWU9InterPro:IPR000719InterPro:IPR011009
InterPro:IPR017441KEGG:ath:AT4G24100ncoils:CoilOMA:IFERSES
Pfam:PF00069Pfscan:PS50011PhylomeDB:Q8RWU9PROSITE:PS00107
PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_194141.2scanprosite:PS00107
SMART:SM00220SMR:Q8RWU9STRING:3702.AT4G24100.1SUPFAM:SSF56112
TAIR:AT4G24100UniGene:At.44763UniProt:Q8RWU9
Coordinates (TAIR10) chr4:+:12515223..12519336
Molecular Weight (calculated) 78751.20 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.57
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGGGGGSSG RGGGSGSGSS KQQRGFSMNP KDYKLMEEIG HGASAVVYRA IYLPTNEVVA IKCLDLDRCN SNLDDIRRES QTMSLIDHPN VIKSFCSFSV
101: DHSLWVVMPF MAQGSCLHLM KTAYSDGFEE SAICCVLKET LKALDYLHRQ GHIHRDVKAG NILLDDNGEI KLGDFGVSAC LFDNGDRQRA RNTFVGTPCW
201: MAPEVLQPGN GYNSKADIWS FGITALELAH GHAPFSKYPP MKVLLMTIQN APPGLDYDRD KKFSKSFKEM VAMCLVKDQT KRPTAEKLLK HSCFKHTKPP
301: EQTVKILFSD LPPLWTRVKS LQDKDAQQLA LKRMATADEE AISQSEYQRG VSAWNFDVRD LKTQASLLID DDDLEESKED EEILCAQFNK VNDREQVFDS
401: LQLYENMNGK EKVSNTEVEE PTCKEKFTFV TTTSSLERMS PNSEHDIPEA KVKPLRRQSQ SGPLTSRTVL SHSASEKSHI FERSESEPQT APTVRRAPSF
501: SGPLNLSTRA SSNSLSAPIK YSGGFRDSLD DKSKANLVQK GRFSVTSGNV DLAKDVPLSI VPRRSPQATP LRKSASVGNW ILEPKMPTAQ PQTIKEHSSH
601: PTSSSPIMPQ LQHLFQQNSI QQDLIMNLLN SLQPVEATEG SQSGKLPPLP RSDSNGNVEP VASERERLLL SSISDLRARL DDLTEELDIE KSKYSQLQQK
701: LKAFTGREH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)