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AT5G07270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XB3 ortholog 3 in Arabidopsis thaliana
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XB3 ortholog 3 in Arabidopsis thaliana (XBAT33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 53429 Blast hits to 23032 proteins in 965 species: Archae - 65; Bacteria - 4348; Metazoa - 27793; Fungi - 4781; Plants - 2636; Viruses - 380; Other Eukaryotes - 13426 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:COG0666eggNOG:ENOG410IGT9EMBL:AL163652
EMBL:BT029297EMBL:CP002688EMBL:DQ086846EnsemblPlants:AT5G07270
EnsemblPlants:AT5G07270.1entrez:830618Gene3D:1.25.40.20Gene3D:3.30.40.10
GeneID:830618Genevisible:Q4FE45GO:GO:0004842GO:GO:0008270
GO:GO:0016567GO:GO:0016874Gramene:AT5G07270.1hmmpanther:PTHR24128
hmmpanther:PTHR24128:SF13HOGENOM:HOG000239563InParanoid:Q4FE45InterPro:IPR001841
InterPro:IPR002110InterPro:IPR013083InterPro:IPR017907InterPro:IPR020683
KEGG:ath:AT5G07270KO:K19044OMA:NGHVRCIPaxDb:Q4FE45
Pfam:PF00023Pfam:PF12796Pfam:PF13857Pfam:Q4FE45
Pfscan:PS50088Pfscan:PS50089Pfscan:PS50297PhylomeDB:Q4FE45
PIR:T48498PRIDE:Q4FE45PRO:PR:Q4FE45PROSITE:PS00518
PROSITE:PS50088PROSITE:PS50089PROSITE:PS50297ProteinModelPortal:Q4FE45
Proteomes:UP000006548RefSeq:NP_196344.2scanprosite:PS00518SMART:SM00248
SMR:Q4FE45STRING:3702.AT5G07270.1SUPFAM:SSF48403SUPFAM:SSF57850
TAIR:AT5G07270tair10-symbols:XBAT33UniGene:At.43358UniPathway:UPA00143
UniProt:Q4FE45
Coordinates (TAIR10) chr5:+:2280821..2283384
Molecular Weight (calculated) 55350.30 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.06
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)