suba logo
AT4G16100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF789)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT5G49220.1); Has 347 Blast hits to 341 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 319; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IICIeggNOG:ENOG4111G6NEMBL:AY054578EMBL:BT015872
EMBL:CP002687EnsemblPlants:AT4G16100EnsemblPlants:AT4G16100.1entrez:827296
GeneID:827296Gramene:AT4G16100.1hmmpanther:PTHR31343hmmpanther:PTHR31343:SF2
HOGENOM:HOG000237909IntAct:Q940I8InterPro:IPR008507KEGG:ath:AT4G16100
ncoils:CoilOMA:GIQLYEDPfam:PF05623PhylomeDB:Q940I8
Proteomes:UP000006548RefSeq:NP_567483.5TAIR:AT4G16100UniGene:At.26462
UniProt:Q940I8
Coordinates (TAIR10) chr4:+:9105809..9107986
Molecular Weight (calculated) 44661.20 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.70
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTTRRIRGE NRFYNPPPMR KLQQEREKKR LEAEEIEKEK KKAKEILDRK IKVEEKEIKQ PEECSTSDCS VPSRVSSTTT TTGTTSSNLG RFLDCTTPIV
101: STQHLPLTSS KGWRTREPEY RPYFLLNDLW DSFEEWSAYG VGVPLLLNGI DSVVQYYVPY LSGIQLYEDP SRACTTRRRV GEESDGDSPR DMSSDGSNDC
201: RELSQNLYRA SLEEKPCIGS SSDESEASSN SPGELVFEYL EGAMPFGREP LTDKISNLSS QFPALRTYRS CDLSPSSWVS VAWYPIYRIP LGQSLQNLDA
301: CFLTFHSLST PCRGTSNEEG QSSSKSVASA KLPLPTFGLA SYKFKLSEWS PESDVDENQR VGTLLRTAEE WLRRLKVILP DFRHFISHSG SAWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)