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AT3G56320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PAP/OAS1 substrate-binding domain superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAP/OAS1 substrate-binding domain superfamily; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT2G40520.4); Has 391 Blast hits to 365 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 102; Plants - 177; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5260eggNOG:KOG1906EMBL:AK228086EMBL:BT008327
EMBL:CP002686EnsemblPlants:AT3G56320EnsemblPlants:AT3G56320.1entrez:824799
GeneID:824799GO:GO:0016021GO:GO:0016779Gramene:AT3G56320.1
hmmpanther:PTHR23092hmmpanther:PTHR23092:SF30HOGENOM:HOG000084944IntAct:Q7Y227
InterPro:IPR002934KEGG:ath:AT3G56320OMA:THQSYRDPfam:PF01909
PhylomeDB:Q7Y227Proteomes:UP000006548RefSeq:NP_191191.2STRING:3702.AT3G56320.1
SUPFAM:SSF81301SUPFAM:SSF81631TAIR:AT3G56320TMHMM:TMhelix
UniGene:At.23883UniGene:At.71191UniProt:Q7Y227
Coordinates (TAIR10) chr3:-:20886193..20888624
Molecular Weight (calculated) 66965.90 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.32
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEIQERLSV SSSSSSSSSS LSLSTALPKG DSLPIDADSW MIAEERAHEI LCTIQPALVS DRSRNEIIDY VRTLIMSHEG IEVFSFGSVP LKTYLPDGDI
101: DLTVLTKQNM DDDFYGQLCS RLQNEERESE FHATDVQFIP AQVKVIKCNI RNIAVDISFN QTAGLCALCF LEQVDQLFGR DHLFKRSIIL VKAWCYYESR
201: ILGANTGLIS TYALAVLVLY IINLFHSSLS GPLAVLYKFL DYYGSFDWNN YCISVNGPVP ISSLPELTAA SPENGHELLL DEKFLRNCVE LYSAPTKAVD
301: SNGLEFPIKH LNIVDPLKYS NNLGKSVTQG NVQRIRHAFT LGARKLRDVL SLPGDTMGWR LEKFFRNSLE RNGKGQRQDV NDPVTAFGTG RSELSELSGD
401: FDSSFGRLVY GQMYHGHSLP GTFQHGYIPV SSHLSGWDIV RHLVTYRKNE FHLRSLNVST SMQPFPLHSL PNGCQNMRKT RGTGTYIPDM SQQVYSDRFR
501: ESGTGTSSTN HLEASSEAID NDGASSCCNL SGEVSTSCTS NKGEECVRPE SVLKSQRSAN LELDDNCQFP PPENLVEPRT SSTLVLENGK EESIRSSQTM
601: NGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)