AT3G12070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RAB geranylgeranyl transferase beta subunit 2 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RAB geranylgeranyl transferase beta subunit 2 (RGTB2); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:3845420..3847140 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35194.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 317 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MADKLVAGKH LRYILNLMAE KKKESFESVV MDHLRMNGAY WGLTTLALLD KLGSVSEDEV VSWVMTCQHE SGGFAGNTGH DPHVLYTLSA VQILALFDKL 101: NILDVEKVSN YIAGLQNEDG SFSGDIWGEV DTRFSYIAIC CLSILKCLDK INVKKAVDYI VSCKNLDGGF GCSPGAESHA GQIFCCVGAL AITGNLHRVD 201: KDLLGWWLCE RQDYESGGLN GRPEKLPDVC YSWWVLSSLI MIDRVHWIEK AKLVKFILDS QDMDNGGISD RPSYTVDIFH TYFGVAGLSL LEYPGVKTID 301: PAYALPVHVI NRILFTK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)