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AT1G11270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.821
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:22909EMBL:AC007259EMBL:AK229702EMBL:BT008547
EMBL:BT008643EMBL:CP002684EnsemblPlants:AT1G11270EnsemblPlants:AT1G11270.1
EnsemblPlants:AT1G11270.2entrez:837669ExpressionAtlas:Q7X7A9GeneID:837669
Genevisible:Q7X7A9GO:GO:0010286hmmpanther:PTHR31945hmmpanther:PTHR31945:SF5
HOGENOM:HOG000112508InParanoid:Q7X7A9IntAct:Q7X7A9InterPro:IPR001810
InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT1G11270OMA:AYDIWAL
PaxDb:Q7X7A9Pfam:PF00646Pfam:PF07734Pfam:Q7X7A9
Pfscan:PS50181PhylomeDB:Q7X7A9PRIDE:Q7X7A9PRO:PR:Q7X7A9
PROSITE:PS50181ProteinModelPortal:Q7X7A9Proteomes:UP000006548RefSeq:NP_172594.1
RefSeq:NP_973810.1SMART:SM00256SMR:Q7X7A9STRING:3702.AT1G11270.1
SUPFAM:SSF81383TAIR:AT1G11270TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.47848UniProt:Q7X7A9
Coordinates (TAIR10) chr1:-:3785715..3786653
Molecular Weight (calculated) 35683.40 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.31
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKRDCSSVV GSERERDGSS LALKRHCSSV VKLLLPHDVV GLILERLPVE SLLRFKCVSN QWKSTIESQC FQERQLIRRM ESRGPDVLVV SFADDEDKYG
101: RKAVFGSSIV STFRFPTLHT LICYGSCEGL ICIYCVYSPN IVVNPATKWH RSCPLSNLQQ FLDDKFEKKE YDFPTPKLAF GKDKLNGTYK QVWLYNSSEF
201: RLDDVTTCEV FDFSNNAWRY VHPASPYRIN DYQDPVYSDG SVHWLTEGKE SKILSFHLHT ETFQVLCEAP FLRERDPVGD SMCILDNRLC VSEINGPAQL
301: IWSLDSSGGN KC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)