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AT4G25440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.858
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger WD40 repeat protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger WD40 repeat protein 1 (ZFWD1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1); Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44; Bacteria - 4332; Metazoa - 10522; Fungi - 6455; Plants - 3358; Viruses - 0; Other Eukaryotes - 3645 (source: NCBI BLink).
Protein Annotations
BioGrid:13936eggNOG:ENOG410IQCWeggNOG:ENOG411058NEMBL:AJ252063
EMBL:AL079350EMBL:BT026122EMBL:CP002687EnsemblPlants:AT4G25440
EnsemblPlants:AT4G25440.1entrez:828649Gene3D:2.130.10.10Gene3D:4.10.1000.10
GeneID:828649GO:GO:0003677GO:GO:0046872Gramene:AT4G25440.1
hmmpanther:PTHR22844hmmpanther:PTHR22844:SF178HOGENOM:HOG000239729InParanoid:Q9FNZ2
IntAct:Q9FNZ2InterPro:IPR000571InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT4G25440
OMA:GERCRYPPaxDb:Q9FNZ2Pfam:PF00400Pfam:PF00642
Pfam:Q9FNZ2Pfscan:PS50082Pfscan:PS50103Pfscan:PS50294
PhylomeDB:Q9FNZ2PRIDE:Q9FNZ2PRINTS:PR00320PRO:PR:Q9FNZ2
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50103PROSITE:PS50294
ProteinModelPortal:Q9FNZ2Proteomes:UP000006548RefSeq:NP_194274.2scanprosite:PS00678
SMART:SM00320SMART:SM00356SMR:Q9FNZ2STRING:3702.AT4G25440.1
SUPFAM:SSF50978SUPFAM:SSF90229TAIR:AT4G25440tair10-symbols:ZFWD1
UniGene:At.32255UniProt:Q9FNZ2
Coordinates (TAIR10) chr4:-:13007107..13009381
Molecular Weight (calculated) 46664.30 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.19
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDMNGGNK RVFQRLGGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGSGPV AASSNKRVAD ESGFAGPSHR RGPGFSGTAN NWGRFGGNRT
101: VTKTEKLCKF WVDGNCPYGD KCRYLHCWSK GDSFSLLTQL DGHQKVVTGI ALPSGSDKLY TASKDETVRI WDCASGQCTG VLNLGGEVGC IISEGPWLLV
201: GMPNLVKAWN IQNNADLSLN GPVGQVYSLV VGTDLLFAGT QDGSILVWRY NSTTSCFDPA ASLLGHTLAV VSLYVGANRL YSGAMDNSIK VWSLDNLQCI
301: QTLTEHTSVV MSLICWDQFL LSCSLDNTVK IWAATEGGNL EVTYTHKEEY GVLALCGVHD AEAKPVLLCS CNDNSLHLYD LPSFTERGKI LAKQEIRSIQ
401: IGPGGIFFTG DGSGQVKVWK WSTESTPILS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)